Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc2c11
(787 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P23396 Cluster: 40S ribosomal protein S3; n=174; Eukary... 399 e-110
UniRef50_Q59N00 Cluster: Likely cytosolic ribosomal protein S3; ... 258 1e-67
UniRef50_Q38EW1 Cluster: 40S ribosomal protein S3, putative; n=4... 247 2e-64
UniRef50_Q22AV9 Cluster: KH domain containing protein; n=3; Olig... 225 1e-57
UniRef50_A2DIM3 Cluster: Ribosomal protein S3, putative; n=1; Tr... 222 7e-57
UniRef50_A7NTL0 Cluster: Chromosome chr18 scaffold_1, whole geno... 215 8e-55
UniRef50_Q8SQM3 Cluster: 40S ribosomal protein S3; n=1; Encephal... 196 4e-49
UniRef50_A7NXL1 Cluster: Chromosome chr5 scaffold_2, whole genom... 167 2e-40
UniRef50_Q01BA3 Cluster: Putative ribosomal protein; n=1; Ostreo... 145 1e-33
UniRef50_Q7QNT9 Cluster: GLP_157_11435_12088; n=1; Giardia lambl... 143 5e-33
UniRef50_Q8U004 Cluster: 30S ribosomal protein S3P; n=5; Euryarc... 142 7e-33
UniRef50_A3CT03 Cluster: 30S ribosomal protein S3P; n=4; Archaea... 132 1e-29
UniRef50_Q8TRU1 Cluster: 30S ribosomal protein S3P; n=8; Euryarc... 130 4e-29
UniRef50_O26116 Cluster: 30S ribosomal protein S3P; n=3; Methano... 124 2e-27
UniRef50_P20281 Cluster: 30S ribosomal protein S3P; n=5; Halobac... 123 6e-27
UniRef50_Q6LXE7 Cluster: 30S ribosomal protein S3P; n=5; Methano... 122 8e-27
UniRef50_Q8TX35 Cluster: 30S ribosomal protein S3P; n=1; Methano... 122 1e-26
UniRef50_A1RXG6 Cluster: 30S ribosomal protein S3P; n=2; Thermof... 118 1e-25
UniRef50_UPI00015BB204 Cluster: SSU ribosomal protein S3P; n=1; ... 118 2e-25
UniRef50_O28360 Cluster: 30S ribosomal protein S3P; n=1; Archaeo... 113 4e-24
UniRef50_Q9UXA0 Cluster: 30S ribosomal protein S3P; n=2; Thermop... 108 1e-22
UniRef50_Q4JB46 Cluster: 30S ribosomal protein S3P; n=3; Sulfolo... 106 7e-22
UniRef50_Q8LNX7 Cluster: Putative ribosomal protein S3; n=1; Zin... 103 4e-21
UniRef50_A3DNB3 Cluster: 30S ribosomal protein S3P; n=1; Staphyl... 98 2e-19
UniRef50_Q8ZWI0 Cluster: 30S ribosomal protein S3P; n=6; Pyrobac... 97 6e-19
UniRef50_Q9HIR5 Cluster: 30S ribosomal protein S3P; n=4; Thermop... 96 8e-19
UniRef50_UPI00005A35DE Cluster: PREDICTED: similar to 40S riboso... 94 3e-18
UniRef50_A0RVX9 Cluster: 30S ribosomal protein S3P; n=2; Thermop... 93 9e-18
UniRef50_A3H696 Cluster: Ribosomal protein S3-like; n=1; Caldivi... 91 2e-17
UniRef50_A5DF25 Cluster: Putative uncharacterized protein; n=1; ... 91 4e-17
UniRef50_Q673S3 Cluster: Ribosomal protein S3; n=2; environmenta... 88 3e-16
UniRef50_Q74MZ4 Cluster: 30S ribosomal protein S3P; n=2; Nanoarc... 70 8e-11
UniRef50_A7NXL5 Cluster: Chromosome chr5 scaffold_2, whole genom... 69 1e-10
UniRef50_A5ATU8 Cluster: Putative uncharacterized protein; n=1; ... 66 7e-10
UniRef50_A7QEK7 Cluster: Chromosome chr17 scaffold_85, whole gen... 66 9e-10
UniRef50_Q3LWD3 Cluster: Ribosomal protein S3; n=1; Bigelowiella... 66 1e-09
UniRef50_A6R2L3 Cluster: Predicted protein; n=1; Ajellomyces cap... 65 2e-09
UniRef50_Q9RXJ6 Cluster: 30S ribosomal protein S3; n=2; Deinococ... 64 5e-09
UniRef50_Q7MTL9 Cluster: 30S ribosomal protein S3; n=19; Bactero... 58 3e-07
UniRef50_Q6KI49 Cluster: 30S ribosomal protein S3; n=9; Mycoplas... 56 1e-06
UniRef50_A6EHQ8 Cluster: 30S ribosomal protein S3; n=1; Pedobact... 54 3e-06
UniRef50_Q12GW5 Cluster: 30S ribosomal protein S3; n=197; Bacter... 54 3e-06
UniRef50_A5B260 Cluster: Putative uncharacterized protein; n=1; ... 53 7e-06
UniRef50_O83225 Cluster: 30S ribosomal protein S3; n=1; Treponem... 51 4e-05
UniRef50_A1KB21 Cluster: 30S ribosomal protein S3; n=67; cellula... 50 5e-05
UniRef50_Q8KAH8 Cluster: 30S ribosomal protein S3; n=10; Chlorob... 50 9e-05
UniRef50_Q7UN14 Cluster: 30S ribosomal protein S3; n=3; Planctom... 49 1e-04
UniRef50_P46772 Cluster: 30S ribosomal protein S3; n=5; Thermoto... 48 3e-04
UniRef50_UPI00015BD7E8 Cluster: UPI00015BD7E8 related cluster; n... 45 0.002
UniRef50_Q6A6N2 Cluster: 30S ribosomal protein S3; n=27; Bacteri... 45 0.002
UniRef50_Q2JFH0 Cluster: 30S ribosomal protein S3; n=94; Bacteri... 44 0.003
UniRef50_P0A4C3 Cluster: 30S ribosomal protein S3; n=39; Bacteri... 44 0.004
UniRef50_A6NXD5 Cluster: Putative uncharacterized protein; n=1; ... 44 0.006
UniRef50_P56798 Cluster: Chloroplast 30S ribosomal protein S3; n... 44 0.006
UniRef50_P46247 Cluster: 30S ribosomal protein S3; n=3; Entomopl... 43 0.008
UniRef50_Q3ZZL8 Cluster: 30S ribosomal protein S3; n=18; Bacteri... 43 0.010
UniRef50_Q9PQQ4 Cluster: 30S ribosomal protein S3; n=1; Ureaplas... 42 0.013
UniRef50_Q04G79 Cluster: 30S ribosomal protein S3; n=1; Oenococc... 42 0.013
UniRef50_Q2GED3 Cluster: 30S ribosomal protein S3; n=1; Neoricke... 41 0.031
UniRef50_Q9XD30 Cluster: 30S ribosomal protein S3; n=4; Leptospi... 39 0.16
UniRef50_Q11HQ8 Cluster: 30S ribosomal protein S3; n=167; cellul... 38 0.22
UniRef50_Q20F10 Cluster: Chloroplast 30S ribosomal protein S3; n... 38 0.22
UniRef50_A0MNG0 Cluster: Putative uncharacterized protein; n=1; ... 38 0.29
UniRef50_A7R9B1 Cluster: Chromosome undetermined scaffold_3592, ... 36 0.87
UniRef50_A5AUQ8 Cluster: Putative uncharacterized protein; n=1; ... 36 0.87
UniRef50_Q6YR15 Cluster: 30S ribosomal protein S3; n=163; Firmic... 36 0.87
UniRef50_Q52188 Cluster: TraC precursor; n=9; root|Rep: TraC pre... 36 1.5
UniRef50_Q6ZS94 Cluster: CDNA FLJ45717 fis, clone FELNG2001613; ... 35 2.0
UniRef50_Q9U982 Cluster: Drosophila dodeca-satellite protein 1; ... 35 2.7
UniRef50_Q9XDW7 Cluster: PsbAa; n=1; Rhodopseudomonas palustris|... 29 3.1
UniRef50_UPI0000DA2268 Cluster: PREDICTED: hypothetical protein;... 34 3.5
UniRef50_Q5YTC3 Cluster: Putative uncharacterized protein; n=1; ... 33 8.1
UniRef50_Q39682 Cluster: Glycine-rich protein; n=1; Daucus carot... 33 8.1
>UniRef50_P23396 Cluster: 40S ribosomal protein S3; n=174;
Eukaryota|Rep: 40S ribosomal protein S3 - Homo sapiens
(Human)
Length = 243
Score = 399 bits (983), Expect = e-110
Identities = 195/226 (86%), Positives = 206/226 (91%)
Frame = +2
Query: 29 MAVNNISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVL 208
MAV ISKKRKFV DG+FKAELNEFLTRELAEDGYSGVEVRVTP R+EIII+ATRTQ+VL
Sbjct: 1 MAVQ-ISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVL 59
Query: 209 GEKGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRAC 388
GEKGRRIRELT+VVQKRF PE SVELYAEKVATRGLCAIAQAESLRYKL+GGLAVRRAC
Sbjct: 60 GEKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRAC 119
Query: 389 YGVLRFIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQ 568
YGVLRFIMESGA+GCEVVVSGKLRGQRAKSMKFVDGLMIHSGDP N YV+TA RHVLLRQ
Sbjct: 120 YGVLRFIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQ 179
Query: 569 GVLGIKVKIMLPWDQQGKNGPKKPQPDHILVTEPKDEPVPLEPTSE 706
GVLGIKVKIMLPWD GK GPKKP PDH+ + EPKDE +P P SE
Sbjct: 180 GVLGIKVKIMLPWDPTGKIGPKKPLPDHVSIVEPKDEILPTTPISE 225
>UniRef50_Q59N00 Cluster: Likely cytosolic ribosomal protein S3;
n=4; Saccharomycetales|Rep: Likely cytosolic ribosomal
protein S3 - Candida albicans (Yeast)
Length = 251
Score = 258 bits (631), Expect = 1e-67
Identities = 129/224 (57%), Positives = 162/224 (72%)
Frame = +2
Query: 44 ISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGR 223
+SKK+K V DGVF AELNEF TRELAE GY+GVEVR TP + E+I+ A+ TQ VLGE+GR
Sbjct: 6 LSKKKKLVADGVFYAELNEFFTRELAEQGYAGVEVRKTPSKLEVIVKASNTQGVLGEQGR 65
Query: 224 RIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLR 403
RI ELTS++ KRF + + + +YAE+V RGL A QAE+L+ KL+ GL +RRA YGVLR
Sbjct: 66 RIHELTSLIVKRFKLSPEGIAIYAERVEERGLSAAVQAEALKAKLLSGLPIRRAAYGVLR 125
Query: 404 FIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGI 583
F M +GA+G EVV+SGKLR RAKS K+ DG MIHSG P D+++ A RHVL+RQGVLGI
Sbjct: 126 FAMGAGAKGVEVVISGKLRAARAKSQKYADGFMIHSGQPTRDFIDIAIRHVLMRQGVLGI 185
Query: 584 KVKIMLPWDQQGKNGPKKPQPDHILVTEPKDEPVPLEPTSEVRS 715
KVKIM + GP + PD + + E KDE + P V+S
Sbjct: 186 KVKIMKD-PAANRFGP-RALPDAVKIAEAKDEDEVI-PAPTVKS 226
>UniRef50_Q38EW1 Cluster: 40S ribosomal protein S3, putative; n=4;
Trypanosoma|Rep: 40S ribosomal protein S3, putative -
Trypanosoma brucei
Length = 266
Score = 247 bits (605), Expect = 2e-64
Identities = 124/210 (59%), Positives = 156/210 (74%)
Frame = +2
Query: 44 ISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGR 223
+SKKR V DGVF AEL EFL RELA+DG++GVE RVTP R+EI+I +T+T+ VLGEKGR
Sbjct: 56 LSKKRMMVRDGVFYAELFEFLKRELADDGFAGVEHRVTPTRTEIVIRSTKTREVLGEKGR 115
Query: 224 RIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLR 403
RIRELT+ +Q+RFN E ++L+AE+V RGL A+AQAESLR+KL+ L VRRA G++R
Sbjct: 116 RIRELTACLQQRFNYKEGKLQLFAERVEVRGLSAMAQAESLRFKLLSNLQVRRAAMGIIR 175
Query: 404 FIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGI 583
++MESGA+GCEV + GK++GQRAKSM F DG MI SG +V+TATRH LR G +G+
Sbjct: 176 YVMESGAKGCEVTIGGKIKGQRAKSMTFRDGYMIKSGTAHKHFVDTATRHCHLRAGTIGV 235
Query: 584 KVKIMLPWDQQGKNGPKKPQPDHILVTEPK 673
VKIM P Q + PD I V EPK
Sbjct: 236 NVKIMRP---QSMIEEDEVLPDVITVIEPK 262
>UniRef50_Q22AV9 Cluster: KH domain containing protein; n=3;
Oligohymenophorea|Rep: KH domain containing protein -
Tetrahymena thermophila SB210
Length = 253
Score = 225 bits (550), Expect = 1e-57
Identities = 100/212 (47%), Positives = 153/212 (72%), Gaps = 2/212 (0%)
Frame = +2
Query: 44 ISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGR 223
I+KK+KFV DGVF AEL+ F ++ L + GY+G+EVR TP ++EI I AT+ Q V+G +G+
Sbjct: 18 INKKKKFVADGVFNAELHSFFSKSLQDAGYAGIEVRRTPTKTEIRIKATKPQQVIGVEGK 77
Query: 224 RIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLR 403
+ +ELT +QKRF + ++++AE + +GLCA AQ E++ YKL+ + VR A +++
Sbjct: 78 KHKELTQFLQKRFGYSDDQIQIWAEPIKFKGLCASAQVEAMNYKLLKDVPVRLAANYIIK 137
Query: 404 FIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGI 583
+++ GA+GCE+++SGKL+ QRAK+MKF G MI +G P NDY++ A RHV +QG++G+
Sbjct: 138 SVIQDGAKGCEIIISGKLKQQRAKTMKFKQGYMICTGQPKNDYIDVAVRHVFFKQGIMGV 197
Query: 584 KVKIMLPWDQQ--GKNGPKKPQPDHILVTEPK 673
KVKIMLP++ K G K P PD++++ PK
Sbjct: 198 KVKIMLPYEPNPAKKFGVKTPIPDNVIIHPPK 229
>UniRef50_A2DIM3 Cluster: Ribosomal protein S3, putative; n=1;
Trichomonas vaginalis G3|Rep: Ribosomal protein S3,
putative - Trichomonas vaginalis G3
Length = 216
Score = 222 bits (543), Expect = 7e-57
Identities = 103/216 (47%), Positives = 146/216 (67%)
Frame = +2
Query: 29 MAVNNISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVL 208
M +K R+ + G+F AELNE LTREL ++GY G EVR TP R+EIII A T+ +
Sbjct: 1 MKAQRCTKVRRIIETGLFYAELNELLTRELTKEGYGGCEVRQTPTRTEIIIKAANTKEFV 60
Query: 209 GEKGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRAC 388
GRR++E+ ++QKR+ + E S+E++ +++ +GL A+ Q ESLRYKLI + RRA
Sbjct: 61 DNHGRRLQEVRMMIQKRWRLKEDSLEIFIDRIQRKGLSALNQLESLRYKLIARIPARRAA 120
Query: 389 YGVLRFIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQ 568
Y ++RF+M++GARGCEV +SGKLRG RA + K+ +G M+ SGD +V A H+ ++Q
Sbjct: 121 YSIIRFVMDAGARGCEVAISGKLRGARASTSKYKEGYMVKSGDVTKQFVTQAVGHIPMKQ 180
Query: 569 GVLGIKVKIMLPWDQQGKNGPKKPQPDHILVTEPKD 676
+GI+V IML D G +GPK+ QPD I V E KD
Sbjct: 181 ATIGIRVLIMLAQDPSGISGPKESQPDVIKVHEAKD 216
>UniRef50_A7NTL0 Cluster: Chromosome chr18 scaffold_1, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr18 scaffold_1, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 617
Score = 215 bits (526), Expect = 8e-55
Identities = 124/212 (58%), Positives = 141/212 (66%)
Frame = +2
Query: 35 VNNISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGE 214
V +SKKRKF DGVF A LNE LTREL E+GYSG EVRVTP+ +EIII AT+T +VLGE
Sbjct: 2 VTQMSKKRKFAVDGVFFAGLNEVLTRELVENGYSGDEVRVTPMCTEIIIRATQTHNVLGE 61
Query: 215 KGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYG 394
KG++I+ELTSVVQKRF E SVEL AEKV RG AIAQAESLRYKL+GGLA+
Sbjct: 62 KGKKIKELTSVVQKRFEFLENSVELCAEKVNNRGFYAIAQAESLRYKLLGGLAM------ 115
Query: 395 VLRFIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGV 574
L QRAKSMKF DG +I SG P DY++ A RHV LRQGV
Sbjct: 116 --------------------LCAQRAKSMKFKDGYLISSGQPVKDYIDLAVRHV-LRQGV 154
Query: 575 LGIKVKIMLPWDQQGKNGPKKPQPDHILVTEP 670
LGIKVKIM WD +GK P PD + + P
Sbjct: 155 LGIKVKIMFNWDPKGKQSLTTPLPDLVTIQTP 186
>UniRef50_Q8SQM3 Cluster: 40S ribosomal protein S3; n=1;
Encephalitozoon cuniculi|Rep: 40S ribosomal protein S3 -
Encephalitozoon cuniculi
Length = 228
Score = 196 bits (479), Expect = 4e-49
Identities = 89/206 (43%), Positives = 136/206 (66%)
Frame = +2
Query: 59 KFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIREL 238
+F+ +G+ AEL EF + L +G+S +E+R+ +II+ + +GEK R+R+
Sbjct: 21 RFMKNGLMNAELKEFFEKALVNEGFSTMELRMQETPIKIILKVAKPHEAIGEKKFRLRQF 80
Query: 239 TSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMES 418
+ +R +P++SVE+ EKV +GLCA+ QA +R K++GG+ RRA L+ +
Sbjct: 81 QHLAAQRLEVPDESVEIVVEKVHEKGLCALIQANFIREKILGGVQYRRAVNMALKTARHA 140
Query: 419 GARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKIM 598
A+GC+++VSGKL+GQRAKS+KF DG++IHSGD DY+NT V +QGV+GI+V+IM
Sbjct: 141 KAQGCQIIVSGKLKGQRAKSVKFQDGVLIHSGDAVKDYINTGYATVETKQGVIGIQVRIM 200
Query: 599 LPWDQQGKNGPKKPQPDHILVTEPKD 676
LP+D +G GP P PD I + EP +
Sbjct: 201 LPYDPEGVLGPNYPLPDRITILEPSE 226
>UniRef50_A7NXL1 Cluster: Chromosome chr5 scaffold_2, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr5 scaffold_2, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 243
Score = 167 bits (407), Expect = 2e-40
Identities = 91/154 (59%), Positives = 108/154 (70%)
Frame = +2
Query: 170 EIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLR 349
EIII AT+TQ+VLG+KGR+IRELTSVVQKRF E +VELYAEK R AIAQAESLR
Sbjct: 101 EIIIHATQTQNVLGKKGRKIRELTSVVQKRFEFLENNVELYAEKFNNRVFYAIAQAESLR 160
Query: 350 YKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCND 529
+KL+GGL VRRA YGVL F+MESG +GCEV+ +I SG P D
Sbjct: 161 FKLLGGLVVRRAGYGVLSFVMESGTKGCEVI----------------GWYIISSGQPVKD 204
Query: 530 YVNTATRHVLLRQGVLGIKVKIMLPWDQQGKNGP 631
Y+N+ RHVLL+QGVL IKVKI++ QG+ GP
Sbjct: 205 YINSVVRHVLLKQGVLSIKVKIIVRLGSQGQAGP 238
>UniRef50_Q01BA3 Cluster: Putative ribosomal protein; n=1;
Ostreococcus tauri|Rep: Putative ribosomal protein -
Ostreococcus tauri
Length = 145
Score = 145 bits (352), Expect = 1e-33
Identities = 66/108 (61%), Positives = 84/108 (77%)
Frame = +2
Query: 374 VRRACYGVLRFIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRH 553
VR ACYGVLR+IMESGA+G EVVVSGKLRGQRAK+MKF DG MI SG+P DY+ + TRH
Sbjct: 30 VRSACYGVLRYIMESGAKGAEVVVSGKLRGQRAKAMKFKDGYMISSGNPVRDYIVSCTRH 89
Query: 554 VLLRQGVLGIKVKIMLPWDQQGKNGPKKPQPDHILVTEPKDEPVPLEP 697
LLRQG +G++VKIML D +G++GP P PD +++ PK++ +P
Sbjct: 90 ALLRQGTIGMRVKIMLDHDPKGRDGPSTPIPDTVVIHTPKEDEDMAKP 137
>UniRef50_Q7QNT9 Cluster: GLP_157_11435_12088; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_157_11435_12088 - Giardia lamblia
ATCC 50803
Length = 217
Score = 143 bits (346), Expect = 5e-33
Identities = 68/182 (37%), Positives = 113/182 (62%)
Frame = +2
Query: 59 KFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIREL 238
K++ D + +AEL+EF +REL + GY+ + T +II + V+G+ R+ ++
Sbjct: 16 KYLNDCIMEAELHEFFSRELVDAGYASCSLCRTIDSICVIIQCAEPEVVMGDNHYRLHKI 75
Query: 239 TSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMES 418
++ RF ++ ++ +K+ RGL A ++LR KL + +RRA Y ++R M +
Sbjct: 76 EYLLAGRFMCDPKNFNIWVDKIIKRGLSAEIMVDNLRAKLEEAMPIRRAAYSIIRTAMRA 135
Query: 419 GARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKIM 598
GA GCEV+V+GKLR QRA++ KF +G +I +G P ++ ATRH+ +RQGV+G+KV+I
Sbjct: 136 GAAGCEVIVAGKLRAQRARANKFKEGCLISTGHPKRIFLAEATRHIKMRQGVIGVKVRIY 195
Query: 599 LP 604
P
Sbjct: 196 NP 197
>UniRef50_Q8U004 Cluster: 30S ribosomal protein S3P; n=5;
Euryarchaeota|Rep: 30S ribosomal protein S3P -
Pyrococcus furiosus
Length = 210
Score = 142 bits (345), Expect = 7e-33
Identities = 74/184 (40%), Positives = 112/184 (60%)
Frame = +2
Query: 53 KRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIR 232
+R F+ + V + ++EFL +EL GY G++++ TP+ +++II A V+G GRRIR
Sbjct: 4 ERYFIREAVREMLIDEFLEKELRRAGYGGLDIKKTPLGTKVIIFAANPGYVIGRGGRRIR 63
Query: 233 ELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIM 412
ELT +++K+F + +E+ E++ L A QA L L G+ RRA Y LR IM
Sbjct: 64 ELTRILEKQFGLENPQIEV--EEIKNPYLNAKVQAVRLAQALERGIHFRRAAYAALRAIM 121
Query: 413 ESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVK 592
+GARG E+ +SGKL G+RAKS++F G + G+P V+ LL+ GV+G+KV
Sbjct: 122 NNGARGVEIRLSGKLTGERAKSIRFYQGYLAKVGNPAETLVSKGYAQALLKLGVIGVKVA 181
Query: 593 IMLP 604
IM P
Sbjct: 182 IMPP 185
>UniRef50_A3CT03 Cluster: 30S ribosomal protein S3P; n=4;
Archaea|Rep: 30S ribosomal protein S3P - Methanoculleus
marisnigri (strain ATCC 35101 / DSM 1498 / JR1)
Length = 234
Score = 132 bits (318), Expect = 1e-29
Identities = 74/216 (34%), Positives = 119/216 (55%), Gaps = 1/216 (0%)
Frame = +2
Query: 53 KRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIR 232
++KF+ DGV + +FLT+EL GY G+++ TP+ +++ I A + V+G+ G+++R
Sbjct: 4 EKKFITDGVRNVRVEKFLTKELKRAGYGGMDIARTPLGTQVTIFAEKPGIVIGKGGKQVR 63
Query: 233 ELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIM 412
+LT + ++I VE+ ++V A AE L L G R+A +R IM
Sbjct: 64 QLTQDLATDYDIESPQVEV--QQVQNPNFNAQIMAERLANALERGWYFRKAGSSTIRRIM 121
Query: 413 ESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVK 592
ESGA GCEV+V+GKL G R+++ KF +G + H G+P V + + G +G++VK
Sbjct: 122 ESGALGCEVIVAGKLTGSRSRTQKFTEGYIKHCGEPSETIVEKGYALAIKKLGTIGVQVK 181
Query: 593 IMLPWDQQGKNGPKKPQPDHILVTEPKDEPV-PLEP 697
I+ P + P +L EPK P P+EP
Sbjct: 182 IVPP-------DARLPDAFDVLEPEPKKAPAEPIEP 210
>UniRef50_Q8TRU1 Cluster: 30S ribosomal protein S3P; n=8;
Euryarchaeota|Rep: 30S ribosomal protein S3P -
Methanosarcina acetivorans
Length = 318
Score = 130 bits (314), Expect = 4e-29
Identities = 67/184 (36%), Positives = 110/184 (59%)
Frame = +2
Query: 53 KRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIR 232
++KFV DG KA ++E+ +L+ GY G+E+ TP+ ++I+I + + V+G+ G+ IR
Sbjct: 4 EKKFVNDGYVKASMDEYFAEQLSRAGYGGMELNRTPMGTQIVIYSEKPGMVIGKAGKVIR 63
Query: 233 ELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIM 412
+LT V ++++ ++ A++V L A A L + G R+A + LR +M
Sbjct: 64 KLTRDVANKYSLENPQID--AQEVKRPELNAQMMASRLAASIERGWYFRKAGHNTLRAVM 121
Query: 413 ESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVK 592
+GA GCEVV+SGKL G R++ KFVDG + HSG+P + V+ + + G LG KV+
Sbjct: 122 NAGALGCEVVISGKLTGARSRVEKFVDGYIKHSGNPVEEVVDEGFAVAVKKLGTLGCKVR 181
Query: 593 IMLP 604
I+ P
Sbjct: 182 IIQP 185
>UniRef50_O26116 Cluster: 30S ribosomal protein S3P; n=3;
Methanobacteriaceae|Rep: 30S ribosomal protein S3P -
Methanobacterium thermoautotrophicum
Length = 258
Score = 124 bits (300), Expect = 2e-27
Identities = 70/218 (32%), Positives = 118/218 (54%)
Frame = +2
Query: 53 KRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIR 232
++ FV +G+ + ++E+L +EL GY G++V+VTP+ + +++ A R V+G G+ +R
Sbjct: 3 EKDFVVEGLRRTRIDEYLEKELERAGYGGMDVQVTPMGTMVVVYAERPGMVIGRGGKTVR 62
Query: 233 ELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIM 412
+T ++ +F++ VE+ ++V L A + L G+ RR Y +R IM
Sbjct: 63 AITQKLKNKFDLENPQVEV--KEVDVPELNPKIMAHKIAAMLQRGMHFRRVAYTTMRRIM 120
Query: 413 ESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVK 592
+GA+G EV +SGK+RG R+ + KF DG + G+P +V V L+ GVLG+ V+
Sbjct: 121 AAGAQGVEVTISGKIRGARSATAKFTDGYIKKCGEPSVKHVREGFATVQLKPGVLGVYVR 180
Query: 593 IMLPWDQQGKNGPKKPQPDHILVTEPKDEPVPLEPTSE 706
IM P PD + + +P+ P E SE
Sbjct: 181 IM---------PPDVVLPDKVEIEDPRVTETPAEEASE 209
>UniRef50_P20281 Cluster: 30S ribosomal protein S3P; n=5;
Halobacteriaceae|Rep: 30S ribosomal protein S3P -
Haloarcula marismortui (Halobacterium marismortui)
Length = 304
Score = 123 bits (296), Expect = 6e-27
Identities = 61/187 (32%), Positives = 116/187 (62%)
Frame = +2
Query: 44 ISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGR 223
++ +++F+ DG+ + +++EF EL GY G++V TP+ ++I++ A + V+G+ G+
Sbjct: 1 MADEQQFIEDGLQRTQIDEFFAEELGRAGYGGMDVAKTPMGTQIVLKAEKPGMVIGKGGK 60
Query: 224 RIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLR 403
IR++T+ ++ RFN+ + V++ ++V L A A+ L L G R+A + +
Sbjct: 61 NIRKITTELEDRFNLDDPQVDV--QEVDEPDLNARIVADRLANALERGWYFRKAGHTTID 118
Query: 404 FIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGI 583
IMESGA G E+V+SGK+ G R++ KF G + H+G+P + V++ +++ G +G+
Sbjct: 119 RIMESGALGAEIVLSGKVTGARSRVEKFNRGYVKHNGEPAEEIVDSGVGVAVMKLGTIGV 178
Query: 584 KVKIMLP 604
+VKI+ P
Sbjct: 179 RVKIIPP 185
>UniRef50_Q6LXE7 Cluster: 30S ribosomal protein S3P; n=5;
Methanococcus|Rep: 30S ribosomal protein S3P -
Methanococcus maripaludis
Length = 211
Score = 122 bits (295), Expect = 8e-27
Identities = 59/184 (32%), Positives = 105/184 (57%)
Frame = +2
Query: 53 KRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIR 232
+R FVG+ V + ++E+ +L GYS ++ + TPI + I + A + V+G KG+ ++
Sbjct: 3 ERTFVGENVSETLIDEYFKTKLVRAGYSHIDFKKTPIGTRITVFAEKPGFVIGRKGKMVK 62
Query: 233 ELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIM 412
ELT + +++ +E+ ++V L + L G+ R+ + +R +M
Sbjct: 63 ELTETLATEYSVKNPQIEV--KQVENPDLDPAVVGHKIASSLERGMHFRKTAHSAIRRVM 120
Query: 413 ESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVK 592
SGA+G ++VSGKL G+R+++ KF+DG M H G+P VN + + L+ G++G+ VK
Sbjct: 121 GSGAKGVAIIVSGKLSGERSRTEKFMDGYMKHCGEPAEALVNKSHQLAKLKLGIVGVTVK 180
Query: 593 IMLP 604
IM P
Sbjct: 181 IMRP 184
>UniRef50_Q8TX35 Cluster: 30S ribosomal protein S3P; n=1;
Methanopyrus kandleri|Rep: 30S ribosomal protein S3P -
Methanopyrus kandleri
Length = 227
Score = 122 bits (294), Expect = 1e-26
Identities = 66/193 (34%), Positives = 109/193 (56%)
Frame = +2
Query: 26 IMAVNNISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSV 205
+M N+ +KFV G+ K EL+E+L EL GY G+ ++ P ++II R
Sbjct: 2 VMYGENVPVHKKFVQYGMLKTELDEYLEEELGRAGYGGMRLQRVPNATKIIAYVERPAIA 61
Query: 206 LGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRA 385
+G +GR IR + VQ+RF + + V + +++ + L A L L G+ RRA
Sbjct: 62 IGRRGRNIRRVEEEVQERFPLLGR-VSIEVKELPSPELNPRVVARRLASALERGIHFRRA 120
Query: 386 CYGVLRFIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLR 565
YG LR IM +GA+G +++SGKL G RA++ KF++G + + G+P ++Y+ + +
Sbjct: 121 AYGALRRIMNAGAKGAMIILSGKLIGARARTEKFMEGAVKYCGEPGDEYMIEGYVQAVTK 180
Query: 566 QGVLGIKVKIMLP 604
G +G+ V+IM P
Sbjct: 181 PGAIGVTVRIMPP 193
>UniRef50_A1RXG6 Cluster: 30S ribosomal protein S3P; n=2;
Thermofilum pendens Hrk 5|Rep: 30S ribosomal protein S3P
- Thermofilum pendens (strain Hrk 5)
Length = 202
Score = 118 bits (285), Expect = 1e-25
Identities = 66/183 (36%), Positives = 102/183 (55%)
Frame = +2
Query: 56 RKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRE 235
RK + G+ LNE+L R+L Y + TPI +++I+ A V+G KG I+
Sbjct: 6 RKVISQGLQYMMLNEYLQRQLVRANYVHAQFFKTPIGTKVIVYAGVPGLVIGRKGANIKA 65
Query: 236 LTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIME 415
+ V+++ F I +++ +V + L A A + L+ G+ RRA L IM
Sbjct: 66 IAEVLEREFGIENPQIDVV--EVPNQDLNAKIMAYRVARALVRGVRFRRAALVALNRIMA 123
Query: 416 SGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKI 595
+GARG E+V+SGKL QR ++ KF G + SG+P + V+ A HVLL+ G+ G+KV+I
Sbjct: 124 AGARGAEIVISGKLTSQRHRTEKFTRGYVPKSGEPGEELVDEAIVHVLLKLGMYGVKVRI 183
Query: 596 MLP 604
M P
Sbjct: 184 MKP 186
>UniRef50_UPI00015BB204 Cluster: SSU ribosomal protein S3P; n=1;
Ignicoccus hospitalis KIN4/I|Rep: SSU ribosomal protein
S3P - Ignicoccus hospitalis KIN4/I
Length = 241
Score = 118 bits (283), Expect = 2e-25
Identities = 74/226 (32%), Positives = 126/226 (55%), Gaps = 3/226 (1%)
Frame = +2
Query: 29 MAVNNISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVL 208
M+V + K+ F+ + + +++E+L + GYS VE++ TP+ + +II A R+ +++
Sbjct: 1 MSVAKKNIKKYFLEQALTQVKVDEYLAYKFHSVGYSKVELQKTPMGTRVIIYAERSGAII 60
Query: 209 GEKGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRAC 388
G +G+ I+++T V+++ F IP V + KV L A A L L G RRA
Sbjct: 61 GRRGQTIKQITKVLEEWFGIPNPQVTVV--KVEEPELDARVMAFRLANALQRGFHFRRAA 118
Query: 389 YGVLRFIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQ 568
Y LR IM +GA G +V VSGKLRG+RA+ K++ G + SG+ + A HVLL+
Sbjct: 119 YTTLRRIMGAGAIGAQVKVSGKLRGERARFEKYIAGKVYKSGNQVVRLTDRAIAHVLLKV 178
Query: 569 GVLGIKVKIMLPWDQQGKNGP---KKPQPDHILVTEPKDEPVPLEP 697
GV G++V I +++ + K P+ + +V + ++E +P
Sbjct: 179 GVEGVEVIISKKSEEERPDDEVRIKSPEEVNEIVQKIREEMQQTQP 224
>UniRef50_O28360 Cluster: 30S ribosomal protein S3P; n=1;
Archaeoglobus fulgidus|Rep: 30S ribosomal protein S3P -
Archaeoglobus fulgidus
Length = 229
Score = 113 bits (273), Expect = 4e-24
Identities = 66/184 (35%), Positives = 103/184 (55%)
Frame = +2
Query: 53 KRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIR 232
+RKFV + + K + E++ E+ G+ GV++ TP+ +++ + R V+G+ GRRI+
Sbjct: 4 ERKFVQERLKKLMVKEWIKDEVRSAGFGGVDILRTPLGTQVTLFVERPGLVIGKGGRRIK 63
Query: 233 ELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIM 412
LT + K F I V + ++V A A L L G RRA Y L IM
Sbjct: 64 ALTEKL-KDFGIENPQVSV--DEVEKPEFNAQLMASLLARALERGWYFRRAGYRFLYRIM 120
Query: 413 ESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVK 592
E+GA+GCE+ +SGKL +RA++ KFV G ++H+GDP V + + GVLG+ V+
Sbjct: 121 EAGAKGCEIEISGKLVSERARTEKFVAGTIVHTGDPAESMVQKGFDIAIKKLGVLGVSVR 180
Query: 593 IMLP 604
I+ P
Sbjct: 181 IIPP 184
>UniRef50_Q9UXA0 Cluster: 30S ribosomal protein S3P; n=2;
Thermoprotei|Rep: 30S ribosomal protein S3P - Sulfolobus
solfataricus
Length = 229
Score = 108 bits (260), Expect = 1e-22
Identities = 65/206 (31%), Positives = 106/206 (51%), Gaps = 2/206 (0%)
Frame = +2
Query: 53 KRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIR 232
KR F+ + K +++E+L ++ Y+GVEV TPI + +II A R ++G GR I+
Sbjct: 5 KRYFLEKSIVKVKIDEYLAKQYYNAEYAGVEVLKTPIGTRVIIYAGRPSMIIGRGGRNIK 64
Query: 233 ELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIM 412
+L + +K F + + + V L A A L L G RRA + +R IM
Sbjct: 65 QLAQIFEKVFGLENPQITI--TNVENPELNARVMAFRLAIALEKGYHFRRAAFISMRRIM 122
Query: 413 ESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVK 592
+GA G E+++SGKL +RA+ K +G++ SG ++ A +L+ G+ G++V
Sbjct: 123 NAGALGAEIIISGKLTTERARYEKLKEGIVYKSGQQLEKMIDRAIAIAMLKPGIFGVEVV 182
Query: 593 IMLPWDQQGK-NGPKKPQ-PDHILVT 664
I P + K N + P P + VT
Sbjct: 183 ITKPLKIEDKINLKESPSVPQEVSVT 208
>UniRef50_Q4JB46 Cluster: 30S ribosomal protein S3P; n=3;
Sulfolobaceae|Rep: 30S ribosomal protein S3P -
Sulfolobus acidocaldarius
Length = 231
Score = 106 bits (254), Expect = 7e-22
Identities = 63/184 (34%), Positives = 97/184 (52%)
Frame = +2
Query: 53 KRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIR 232
KR F+ K ++E+L ++ Y+GVE+ TPI + +II A R ++G+ G+ I+
Sbjct: 5 KRHFLQKAAIKVMVDEYLAKQFYNAEYAGVEIVKTPIGTRVIIYAGRPPLIIGKGGKTIK 64
Query: 233 ELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIM 412
+L V++K F + + + A + L A A L L G RRA + +R IM
Sbjct: 65 QLAQVLEKFFGLENPQITVTAAE--NPELNARVMAFRLAIALEKGYHFRRAAFITIRRIM 122
Query: 413 ESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVK 592
SGA G EV+VSGKL +RAK K +G + SG ++ A +L+ GV G++V
Sbjct: 123 SSGAVGAEVIVSGKLTSERAKYEKLKEGTVYKSGQQLEKIIDRAIGIAMLKPGVYGVEVV 182
Query: 593 IMLP 604
I P
Sbjct: 183 ITKP 186
>UniRef50_Q8LNX7 Cluster: Putative ribosomal protein S3; n=1; Zinnia
elegans|Rep: Putative ribosomal protein S3 - Zinnia
elegans (Zinnia)
Length = 143
Score = 103 bits (248), Expect = 4e-21
Identities = 46/70 (65%), Positives = 55/70 (78%)
Frame = +2
Query: 464 QRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKIMLPWDQQGKNGPKKPQ 643
QRAKSMKF DG M+ SG P +Y+++A RHVLLRQGVLGIKVKIML WD GK GPK P
Sbjct: 2 QRAKSMKFKDGYMVSSGQPVKEYIDSAVRHVLLRQGVLGIKVKIMLDWDPTGKLGPKTPL 61
Query: 644 PDHILVTEPK 673
PD++++ PK
Sbjct: 62 PDNVVIHMPK 71
>UniRef50_A3DNB3 Cluster: 30S ribosomal protein S3P; n=1;
Staphylothermus marinus F1|Rep: 30S ribosomal protein
S3P - Staphylothermus marinus (strain ATCC 43588 / DSM
3639 / F1)
Length = 224
Score = 98.3 bits (234), Expect = 2e-19
Identities = 59/184 (32%), Positives = 97/184 (52%)
Frame = +2
Query: 53 KRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIR 232
K F+ + K L+EFL + GY+G+E+ TP ++I A ++G G IR
Sbjct: 7 KSYFIDYSLKKVMLDEFLANYFKDAGYAGMELYKTPTGYRVVIYAEYPGRIIGRGGSIIR 66
Query: 233 ELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIM 412
+L +++Q F + ++V + V L A A + L + RR +LR +M
Sbjct: 67 KLMTIMQTHFGL--ENVNITVSPVPDPDLNARIVAFRIVRALEKEIPYRRVAMAMLRRVM 124
Query: 413 ESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVK 592
E+GA G E+++SGKLR +RA+ K G + +GD + V+ A LL++GV G++V
Sbjct: 125 EAGAVGAEIIISGKLRSERARYEKLKAGRIYKAGDMVDYVVDRAVGKALLKRGVYGVEVV 184
Query: 593 IMLP 604
I+ P
Sbjct: 185 IVRP 188
>UniRef50_Q8ZWI0 Cluster: 30S ribosomal protein S3P; n=6;
Pyrobaculum|Rep: 30S ribosomal protein S3P - Pyrobaculum
aerophilum
Length = 218
Score = 96.7 bits (230), Expect = 6e-19
Identities = 53/181 (29%), Positives = 96/181 (53%), Gaps = 1/181 (0%)
Frame = +2
Query: 56 RKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRE 235
+K + + K + EFL L++ GY E+ TP+ + I+I A R ++G KG ++E
Sbjct: 12 KKILEENKKKWMIKEFLEYRLSKYGYIDSEILKTPLGTRIVIYAERPSRIIGRKGAIVKE 71
Query: 236 LTSVVQKRFNIPEQSVELY-AEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIM 412
+++++ + + +++ K+ + A + + G+ RR + +R +M
Sbjct: 72 ISNILTTKLGVENPQIDVIDISKIEAPEMFPKVVAYRIANAMAKGVRFRRVMFVAIRQLM 131
Query: 413 ESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVK 592
E+GA+G E+VVSGKL +RA+ K G + G + V A HVLL+ G+ GI+V+
Sbjct: 132 EAGAKGFEIVVSGKLSTERARFEKQTYGKLYKIGYDAKNRVRRAVVHVLLKPGIYGIEVR 191
Query: 593 I 595
I
Sbjct: 192 I 192
>UniRef50_Q9HIR5 Cluster: 30S ribosomal protein S3P; n=4;
Thermoplasmatales|Rep: 30S ribosomal protein S3P -
Thermoplasma acidophilum
Length = 225
Score = 96.3 bits (229), Expect = 8e-19
Identities = 51/185 (27%), Positives = 102/185 (55%)
Frame = +2
Query: 50 KKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRI 229
K+RKF+ + V + + E++ +E G+ + ++ TP + I + R V+G +G ++
Sbjct: 2 KERKFINEAVKRLLVCEYVVKETENAGFGNMVMKRTPFGTNITLYVNRPGLVIGRRGSKV 61
Query: 230 RELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFI 409
+++T ++K++ I +E+ + V L A+ + L G + R+A L
Sbjct: 62 QQMTDTLEKKYGIETPQIEV--KDVKDPDLNPSVIAKKIALSLEKGWSYRKAGNTSLNRT 119
Query: 410 MESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKV 589
+++GA+G + +SGK+ G+RA+ KF+ G + +SG+P + + T L+ G+LG+ V
Sbjct: 120 IQAGAKGVLIKISGKISGERARYQKFIYGNVKYSGEPGSKGMITGFSTAKLKVGILGVTV 179
Query: 590 KIMLP 604
KI+ P
Sbjct: 180 KILNP 184
>UniRef50_UPI00005A35DE Cluster: PREDICTED: similar to 40S ribosomal
protein S3; n=1; Canis lupus familiaris|Rep: PREDICTED:
similar to 40S ribosomal protein S3 - Canis familiaris
Length = 161
Score = 94.3 bits (224), Expect = 3e-18
Identities = 45/57 (78%), Positives = 51/57 (89%)
Frame = +2
Query: 47 SKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEK 217
SKKR+FV DG+F+AELNEFLTRELAEDG S VEVRVTP + EIII+ TRTQ+VLGEK
Sbjct: 6 SKKRQFVADGIFRAELNEFLTRELAEDGDSRVEVRVTPTKPEIIILTTRTQNVLGEK 62
Score = 87.8 bits (208), Expect = 3e-16
Identities = 43/69 (62%), Positives = 50/69 (72%)
Frame = +2
Query: 407 IMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIK 586
+ ESGA+G E +VSGKL+GQRAKS KFVD MIHS D N YV+T+ HVLLRQGVLG K
Sbjct: 80 VQESGAKGYEAMVSGKLQGQRAKSAKFVDDSMIHSRDCVNHYVDTSVHHVLLRQGVLGSK 139
Query: 587 VKIMLPWDQ 613
+ P Q
Sbjct: 140 CRSCFPGTQ 148
>UniRef50_A0RVX9 Cluster: 30S ribosomal protein S3P; n=2;
Thermoprotei|Rep: 30S ribosomal protein S3P -
Cenarchaeum symbiosum
Length = 261
Score = 92.7 bits (220), Expect = 9e-18
Identities = 61/200 (30%), Positives = 101/200 (50%), Gaps = 1/200 (0%)
Frame = +2
Query: 89 ELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNI 268
+L EFL + + G+SGVEV P ++I + TR V+G KG IRELT ++K F++
Sbjct: 16 KLREFLRENIKDSGFSGVEVEKNPRGTKITLHVTRPGIVIGRKGVGIRELTERLEKDFDL 75
Query: 269 PEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIME-SGARGCEVVV 445
V++ +++ T L + + G A RRA ++ IME A G ++ +
Sbjct: 76 KSPQVDV--KEIETPELYPGVMCNRMASHIERGTAFRRATMWTIQQIMEKKDAMGVQITI 133
Query: 446 SGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKIMLPWDQQGKN 625
SGKLRG R+ K G++ +G + V HV G++GI+++I D+ K+
Sbjct: 134 SGKLRGDRSAFEKHTSGILPRAGHYADVIVLDDVVHVKTPMGLIGIRIRIARR-DKFRKD 192
Query: 626 GPKKPQPDHILVTEPKDEPV 685
K + D + +P+ V
Sbjct: 193 FEMKAEKDVVPAPKPEHHDV 212
>UniRef50_A3H696 Cluster: Ribosomal protein S3-like; n=1; Caldivirga
maquilingensis IC-167|Rep: Ribosomal protein S3-like -
Caldivirga maquilingensis IC-167
Length = 226
Score = 91.5 bits (217), Expect = 2e-17
Identities = 50/209 (23%), Positives = 109/209 (52%)
Frame = +2
Query: 56 RKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRE 235
++ + D K + E+L L + Y ++ T + + I+I+A + ++G KG++++
Sbjct: 3 KRIIDDNKKKWMIKEYLNIALTRNRYVDSIIQRTTLGTRIVIIAEKKNRIIGRKGQQVKA 62
Query: 236 LTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIME 415
L +++ +FN+ +++ E +A + + G+ RRA LR + E
Sbjct: 63 LADILKSKFNLDNVVIDVIQEPHPEYNARLVALR--IADAMAKGIRFRRAAIIALRQLQE 120
Query: 416 SGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKI 595
+ +G EV++SGKL +R++ K+ G++I +G + V A VLL+ G+ ++V++
Sbjct: 121 ANVQGAEVIISGKLTTERSRFEKYTTGIVIKAGQDALEKVQEAVIPVLLKPGIFSVRVRV 180
Query: 596 MLPWDQQGKNGPKKPQPDHILVTEPKDEP 682
LP D + + + P+ + V + +++P
Sbjct: 181 -LPPDAKLSDRFEVKSPEEVQVKQIENKP 208
>UniRef50_A5DF25 Cluster: Putative uncharacterized protein; n=1;
Pichia guilliermondii|Rep: Putative uncharacterized
protein - Pichia guilliermondii (Yeast) (Candida
guilliermondii)
Length = 278
Score = 90.6 bits (215), Expect = 4e-17
Identities = 52/183 (28%), Positives = 95/183 (51%)
Frame = -1
Query: 598 HDFDLDS*YSLPEKHMSGSSVDVIIARVSRVDHESIYKLH*FGTLTTQLARYNNFTTTGT 419
H+ D D+ +L +H+S +V+ ++ ++RVDHE++ L G+ ++Q +N T T
Sbjct: 82 HNLDSDTQNTLSHQHVSDGNVNKVVGWLTRVDHETVRVLLRLGSSSSQFTGDDNLHTLST 141
Query: 418 RFHDETENTIASTTYSETSDKLVS*RFGLGDSAKTTSSHLFSIQFYRLLWNVESLLYYGS 239
H ++++T+ +++ +T +L FGL S +T+ + +ESL G
Sbjct: 142 SSHGKSQHTVGGSSHWQTVQQLGFQGFGLDSSGQTSLLDSLGVDDNSFRRQLESLDNQGG 201
Query: 238 QLTDSASFLSEHTLCPGGHNNDLRADGSDPHFHAGVPVLGQLPSEELIEFCLENPISNKF 59
QL DS S S++TL G +N+L+ + GV + Q EE ++ +E+ IS +
Sbjct: 202 QLVDSTSLFSQNTLGVGSLDNNLQLGWGLSDLNTGVTLFSQFSGEEFVQLGVEDTISYQL 261
Query: 58 SLL 50
S L
Sbjct: 262 SFL 264
>UniRef50_Q673S3 Cluster: Ribosomal protein S3; n=2; environmental
samples|Rep: Ribosomal protein S3 - uncultured marine
group II euryarchaeote DeepAnt-JyKC7
Length = 307
Score = 87.8 bits (208), Expect = 3e-16
Identities = 52/183 (28%), Positives = 91/183 (49%)
Frame = +2
Query: 56 RKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRE 235
R F+ V + + E+L RE G+ G+E TP +++ + A + V+G +G+ I E
Sbjct: 9 RTFINRNVERHMVREYLLRETERAGFGGLEFNRTPEGTKVTLSAEQVGRVIGRRGKVIHE 68
Query: 236 LTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIME 415
L ++ F + +E+ ++ L A A L L G RRA + + IM+
Sbjct: 69 LQYRLKSDFKLENPRLEV--NEIEEPRLNAQVMASRLASSLERGWFFRRAGHSTAQNIMD 126
Query: 416 SGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKI 595
+GARGC +++SGK+ G R + KF G + G+ +++ + + G +G V+I
Sbjct: 127 AGARGCLIILSGKISGPRHRVQKFQQGHIKFCGETALQFMDEGFSTAVKKLGTVGCTVRI 186
Query: 596 MLP 604
M P
Sbjct: 187 MRP 189
>UniRef50_Q74MZ4 Cluster: 30S ribosomal protein S3P; n=2;
Nanoarchaeum equitans|Rep: 30S ribosomal protein S3P -
Nanoarchaeum equitans
Length = 230
Score = 69.7 bits (163), Expect = 8e-11
Identities = 54/184 (29%), Positives = 87/184 (47%), Gaps = 1/184 (0%)
Frame = +2
Query: 56 RKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRE 235
RKF+ + EF+ L S V +R TPI + +II + R + + E R
Sbjct: 7 RKFIQNAKLTVFSQEFIRLYLRGANVSKVIIRQTPIVNRVIIYSARPKMISEE---RKAH 63
Query: 236 LTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGL-AVRRACYGVLRFIM 412
L +++ +F + + +E+ + L A AE L + + A RR L IM
Sbjct: 64 LAKLLELKFGLEKPVIEVLP--IENPNLDAHVIAERLAMGIERNIRAYRRLAQRYLETIM 121
Query: 413 ESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVK 592
+GA G E+V++G+L GQR K+ +F G + +G ++ A L+ GV GI V
Sbjct: 122 NAGAIGAEIVIAGRLSGQRGKTWRFKAGNLRKTGTIGQFELDRAFNIAYLKPGVAGIHVT 181
Query: 593 IMLP 604
I+ P
Sbjct: 182 ILKP 185
>UniRef50_A7NXL5 Cluster: Chromosome chr5 scaffold_2, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr5 scaffold_2, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 149
Score = 69.3 bits (162), Expect = 1e-10
Identities = 33/45 (73%), Positives = 39/45 (86%)
Frame = +2
Query: 113 ELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSV 247
+++EDGYSGV+VRVTP+R EIII ATRTQ+ LGEK RRIREL V
Sbjct: 16 DISEDGYSGVQVRVTPMRMEIIIHATRTQNALGEKRRRIRELILV 60
>UniRef50_A5ATU8 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 286
Score = 66.5 bits (155), Expect = 7e-10
Identities = 31/46 (67%), Positives = 38/46 (82%)
Frame = +2
Query: 113 ELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVV 250
++ EDGYS V+VRVTP+ EII+ ATRTQ+ L EKGRRIRELT V+
Sbjct: 139 DILEDGYSNVKVRVTPMGMEIIVRATRTQNALSEKGRRIRELTLVM 184
>UniRef50_A7QEK7 Cluster: Chromosome chr17 scaffold_85, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr17 scaffold_85, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 514
Score = 66.1 bits (154), Expect = 9e-10
Identities = 32/45 (71%), Positives = 37/45 (82%)
Frame = +2
Query: 113 ELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSV 247
++ EDGYS V+VRVTP+ EIII ATRTQ+ L EKGRRIRELT V
Sbjct: 406 DILEDGYSDVKVRVTPMGMEIIIRATRTQNALSEKGRRIRELTLV 450
Score = 42.7 bits (96), Expect = 0.010
Identities = 19/32 (59%), Positives = 26/32 (81%)
Frame = +2
Query: 113 ELAEDGYSGVEVRVTPIRSEIIIMATRTQSVL 208
++ EDGYS ++V+VT +R EIII ATRTQ+ L
Sbjct: 281 DIPEDGYSDIKVKVTGMRMEIIIHATRTQNAL 312
>UniRef50_Q3LWD3 Cluster: Ribosomal protein S3; n=1; Bigelowiella
natans|Rep: Ribosomal protein S3 - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 262
Score = 65.7 bits (153), Expect = 1e-09
Identities = 32/120 (26%), Positives = 64/120 (53%), Gaps = 1/120 (0%)
Frame = +2
Query: 242 SVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKL-IGGLAVRRACYGVLRFIMES 418
+++ F I +++ + + + + Q+ ++ + R + LRF++ S
Sbjct: 112 NIISHLFFINSNKLKILYKNYKSSNISTMTQSSRMKEAFNYTNKSFRSIIFNTLRFLINS 171
Query: 419 GARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKIM 598
G RGC + + G R +R K+ KF GL+ HSG ND++++ + ++ ++G LGI +KIM
Sbjct: 172 GVRGCMIKLKGVYRSKRTKTFKFRRGLISHSGIQNNDWIDSDSFYLNKKRGTLGINIKIM 231
>UniRef50_A6R2L3 Cluster: Predicted protein; n=1; Ajellomyces
capsulatus NAm1|Rep: Predicted protein - Ajellomyces
capsulatus NAm1
Length = 151
Score = 64.9 bits (151), Expect = 2e-09
Identities = 32/46 (69%), Positives = 37/46 (80%)
Frame = +2
Query: 41 NISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEII 178
+ISK+RKFV GVF A LN F RELAE+GYSGVEVRVTP ++II
Sbjct: 84 DISKRRKFVVGGVFYAGLNGFFLRELAEEGYSGVEVRVTPTGTDII 129
>UniRef50_Q9RXJ6 Cluster: 30S ribosomal protein S3; n=2;
Deinococcus|Rep: 30S ribosomal protein S3 - Deinococcus
radiodurans
Length = 249
Score = 63.7 bits (148), Expect = 5e-09
Identities = 45/171 (26%), Positives = 89/171 (52%), Gaps = 2/171 (1%)
Frame = +2
Query: 89 ELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNI 268
++ + + ++LA G + +E+ + +II A + V+G+ G I+EL +++ +
Sbjct: 38 QIRQLINKKLAAAGIARIEIERAGQQVNVIISAAKPGVVIGKGGESIKELRGDIERL--V 95
Query: 269 PEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVS 448
+V + ++ + A A + ++ A RRA + +MESGARG +V++S
Sbjct: 96 SAGTVAVNVAEIPNPNISAPLVALRIAEQIERRFAFRRAMKQAAQRVMESGARGVKVILS 155
Query: 449 GKLRG-QRAKSMKFVDG-LMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKI 595
G+L G ++A++ K ++G + +H+ DY R G+LGIKV +
Sbjct: 156 GRLGGAEQARTEKVLEGRVPLHTLRADIDYGTALAR---TTYGILGIKVLV 203
>UniRef50_Q7MTL9 Cluster: 30S ribosomal protein S3; n=19;
Bacteroidetes|Rep: 30S ribosomal protein S3 -
Porphyromonas gingivalis (Bacteroides gingivalis)
Length = 246
Score = 57.6 bits (133), Expect = 3e-07
Identities = 47/172 (27%), Positives = 84/172 (48%), Gaps = 2/172 (1%)
Frame = +2
Query: 86 AELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFN 265
+ + ++L LA+ S + + I I R ++G+ G+ + +L +++
Sbjct: 36 SRIRQYLNARLAKASVSRIVIERALKLVTITICTARPGMIIGKAGQEVDKLKEELKR--- 92
Query: 266 IPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVV 445
I ++ V++ ++ L A AE++ +L G +A RRA + M GA G ++ V
Sbjct: 93 ITKKDVQINIYEIRKPELDAAIVAENIARQLEGKIAYRRAVKMAIASAMRMGAEGIKIQV 152
Query: 446 SGKLRG-QRAKSMKFVDG-LMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKI 595
SG+L G + A+S F +G +H+ DY A L + G+LGIKV I
Sbjct: 153 SGRLNGAEMARSEMFKEGRTPLHTLRADIDY---ALAEALTKVGLLGIKVWI 201
>UniRef50_Q6KI49 Cluster: 30S ribosomal protein S3; n=9;
Mycoplasma|Rep: 30S ribosomal protein S3 - Mycoplasma
mobile
Length = 225
Score = 55.6 bits (128), Expect = 1e-06
Identities = 40/141 (28%), Positives = 67/141 (47%), Gaps = 2/141 (1%)
Frame = +2
Query: 173 IIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRY 352
+++ + + ++LG+ G I +LT +QK E + + + L AI AE +
Sbjct: 67 VLVHSAKPGAILGQNGENINKLTQDIQKLLRNKELKLNIEVVNIKNPDLNAIILAEQIAI 126
Query: 353 KLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRG-QRAKSMKFVDGLM-IHSGDPCN 526
KL R A +R M+SGA+G + VSG+L G A+S + +G M +H+
Sbjct: 127 KLENRAPFRVAQKFAIRNAMKSGAKGIKTQVSGRLNGVDMARSEGYSEGEMKLHTLRQDV 186
Query: 527 DYVNTATRHVLLRQGVLGIKV 589
D+ R G +G+KV
Sbjct: 187 DFAMATAR---TTYGAIGVKV 204
>UniRef50_A6EHQ8 Cluster: 30S ribosomal protein S3; n=1; Pedobacter
sp. BAL39|Rep: 30S ribosomal protein S3 - Pedobacter sp.
BAL39
Length = 281
Score = 54.4 bits (125), Expect = 3e-06
Identities = 41/171 (23%), Positives = 86/171 (50%), Gaps = 2/171 (1%)
Frame = +2
Query: 89 ELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNI 268
++ ++L+ +A+ G + V + T R + I R V+G+ G+ + ++ ++K +
Sbjct: 37 KIRKYLSARIAKGGVAKVVIERTLKRITVTIHTARPGIVIGKAGQEVDKIKEELKK---L 93
Query: 269 PEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVS 448
++ +++ ++ L A AE + +L ++ RRA + M GA G +++ S
Sbjct: 94 TKKEIQINIFEIKRPELDAQLVAEGVAKQLEARISFRRAMKSTIAATMRMGAEGIKIMTS 153
Query: 449 GKLRG-QRAKSMKFVDG-LMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKI 595
G+L G + A+S ++ +G + +H+ DY A L G +G+KV I
Sbjct: 154 GRLGGAEMARSEQYKEGRIPLHTFRADIDY---ALAEALTTYGKIGVKVWI 201
>UniRef50_Q12GW5 Cluster: 30S ribosomal protein S3; n=197;
Bacteria|Rep: 30S ribosomal protein S3 - Polaromonas sp.
(strain JS666 / ATCC BAA-500)
Length = 301
Score = 54.4 bits (125), Expect = 3e-06
Identities = 57/225 (25%), Positives = 96/225 (42%), Gaps = 3/225 (1%)
Frame = +2
Query: 47 SKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRR 226
+ R F G ++ E+L +L S V + + I I + R V+G+KG
Sbjct: 24 ASNRDFAGMLAEDIKVREYLKAKLKNAAVSRVLIERPAKNARITIFSARPGVVIGKKGED 83
Query: 227 IRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRF 406
I L + ++ +P V + E+V + A A+S+ +L + RRA ++
Sbjct: 84 IENLKKELSRQLGVP---VAVNIEEVRKPEIDAKLIADSITQQLEKRIMFRRAMKRAMQN 140
Query: 407 IMESGARGCEVVVSGKLRG-QRAKSMKFVDG-LMIHSGDPCNDYVNTATRHVLLRQGVLG 580
M GA G +++ SG+L G + A+ + +G + +H+ DY T GV+G
Sbjct: 141 AMRLGALGIKIMSSGRLNGIEIARCEWYREGRVPLHTLRADIDY---GTSEAKTTYGVIG 197
Query: 581 IKVKIMLPWDQQGKNGPKKPQPDHILVTEPKDEP-VPLEPTSEVR 712
+KV W +G + P L P DE P P + R
Sbjct: 198 VKV-----WVYKGDTLGRGESPGAKLDAAPSDEERKPRGPRRDAR 237
>UniRef50_A5B260 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 414
Score = 53.2 bits (122), Expect = 7e-06
Identities = 25/47 (53%), Positives = 36/47 (76%)
Frame = +2
Query: 113 ELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQ 253
++ EDGYS ++V+VT + EIII AT+TQ+ L E GR++RELT V +
Sbjct: 238 DIPEDGYSDIKVKVTGMCMEIIIRATQTQNALIENGRKMRELTLVTR 284
>UniRef50_O83225 Cluster: 30S ribosomal protein S3; n=1; Treponema
pallidum|Rep: 30S ribosomal protein S3 - Treponema
pallidum
Length = 247
Score = 50.8 bits (116), Expect = 4e-05
Identities = 50/203 (24%), Positives = 96/203 (47%), Gaps = 11/203 (5%)
Frame = +2
Query: 14 APVAI-MAVNNISKKRKFVGDGVFKAELNEFLT--------RELAEDGYSGVEVRVTPIR 166
+P+ + + +N + R + G + A L+E L E + VE+ P R
Sbjct: 6 SPIGLRLGINKVWSSRWYAGPREYAALLHEDLRIRSMIRSFPECKNADIAEVEIVRHPQR 65
Query: 167 SEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESL 346
+++ R V+G KG I ++ + VQKR N + V++ +++ L A A+++
Sbjct: 66 VTVVMHTARPGVVIGAKGVNIEKIGAEVQKRLN---KKVQIKVKEIKRMELNAYLVAQNV 122
Query: 347 RYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRG-QRAKSMKFVDG-LMIHSGDP 520
+L ++ R+ M+SGA+G ++ VSG+L G + +++ + +G +H+
Sbjct: 123 ARQLTARVSFRKCLRQACAGTMKSGAQGVKIRVSGRLGGAEMSRTEEIKEGRTPLHTLRA 182
Query: 521 CNDYVNTATRHVLLRQGVLGIKV 589
DY A H G +G+KV
Sbjct: 183 DIDY-GFAEAHT--TYGSIGVKV 202
>UniRef50_A1KB21 Cluster: 30S ribosomal protein S3; n=67; cellular
organisms|Rep: 30S ribosomal protein S3 - Azoarcus sp.
(strain BH72)
Length = 260
Score = 50.4 bits (115), Expect = 5e-05
Identities = 50/197 (25%), Positives = 92/197 (46%), Gaps = 2/197 (1%)
Frame = +2
Query: 89 ELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNI 268
++ ++L + LA V + + + + + R V+G+KG I L +QK +
Sbjct: 38 KVRDYLKKRLAHASVGRVVIERPAKNARVTLFSARPGVVIGKKGEDIEALKRDLQKIVGV 97
Query: 269 PEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVS 448
P V + E+V + A A+S+ +L + RRA ++ M GA+G +++ S
Sbjct: 98 P---VHVNIEEVRKPEIDAKLIADSIAQQLEKRIMFRRAMKRAMQNAMRLGAQGIKIMSS 154
Query: 449 GKLRG-QRAKSMKFVDG-LMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKIMLPWDQQGK 622
G+L G + A++ + +G + +H+ DY GV+GIKV W +G+
Sbjct: 155 GRLNGAEIARTEWYREGRVPLHTLRANIDY---GVSEAQTTYGVIGIKV-----WVFKGE 206
Query: 623 NGPKKPQPDHILVTEPK 673
+ QP +V EP+
Sbjct: 207 MLGRNEQP---VVAEPE 220
>UniRef50_Q8KAH8 Cluster: 30S ribosomal protein S3; n=10;
Chlorobiaceae|Rep: 30S ribosomal protein S3 - Chlorobium
tepidum
Length = 253
Score = 49.6 bits (113), Expect = 9e-05
Identities = 47/179 (26%), Positives = 88/179 (49%), Gaps = 2/179 (1%)
Frame = +2
Query: 59 KFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIREL 238
K D V + ++ L +E A G + + + T +I I A R +++G KG I L
Sbjct: 32 KIKQDQVIRNYVHARLKKEKA--GIAKIVIERTTKHIKINIYAARPGAIVGHKGEEINNL 89
Query: 239 TSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMES 418
+ Q+ I + V++ +V + A E++ Y+L ++ RRA ++ M +
Sbjct: 90 S---QELTRITGKEVKIDVIEVIKPEIEAQLIGENIAYQLENRVSFRRAMKMAIQQAMRA 146
Query: 419 GARGCEVVVSGKLRG-QRAKSMKFVDG-LMIHSGDPCNDYVNTATRHVLLRQGVLGIKV 589
GA G + +G+L G + A++ ++ +G + +H+ DY + T H + G +GIKV
Sbjct: 147 GAEGVRIRCAGRLGGAEIARAEQYKEGKIPLHTLRANVDYA-SVTAHTI--AGAIGIKV 202
>UniRef50_Q7UN14 Cluster: 30S ribosomal protein S3; n=3;
Planctomycetaceae|Rep: 30S ribosomal protein S3 -
Rhodopirellula baltica
Length = 236
Score = 49.2 bits (112), Expect = 1e-04
Identities = 50/200 (25%), Positives = 94/200 (47%), Gaps = 6/200 (3%)
Frame = +2
Query: 47 SKKRKFVGDGVFKAELNEFLTRELAEDGY--SGVE-VRVTPIRSEIIIM--ATRTQSVLG 211
+ K+ F V ++ EF+T+ + Y +G++ + + R E+ +M R ++G
Sbjct: 24 ASKQDFADLLVEDRKIREFITKHPKKSQYKSAGIDRIEIERTRDEVRVMLYVARPGLIIG 83
Query: 212 EKGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACY 391
+KG+ I L + +Q N+ + + L E+V L A AE + +L + RR
Sbjct: 84 KKGQEIEILQAELQ---NLVGRRINLKVEEVGRPELQAQLVAEDISQQLAKRSSFRRTMK 140
Query: 392 GVLRFIMESGARGCEVVVSGKLRG-QRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQ 568
+L M++GA+G ++ ++G+L G + A+ K G + S ++ + Q
Sbjct: 141 RMLEQTMDAGAKGIKIQMAGRLGGAEMARREKQSAGSIPLS--TLQAKIDYGFTEAMTPQ 198
Query: 569 GVLGIKVKIMLPWDQQGKNG 628
G +GI+V W QG G
Sbjct: 199 GHIGIQV-----WINQGTYG 213
>UniRef50_P46772 Cluster: 30S ribosomal protein S3; n=5;
Thermotogaceae|Rep: 30S ribosomal protein S3 -
Thermotoga maritima
Length = 209
Score = 48.0 bits (109), Expect = 3e-04
Identities = 47/172 (27%), Positives = 81/172 (47%), Gaps = 3/172 (1%)
Frame = +2
Query: 89 ELNEFLTRELAEDGYSGVEV-RVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFN 265
E+ + + + G S + V R R I + R ++G KG I L ++++FN
Sbjct: 37 EIRKIIKNKYYHAGISEIYVERPDAERINITVKTARPGIIIGRKGSEITSLREELERKFN 96
Query: 266 IPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVV 445
+ V + E++ T L A AES+ ++ + + A + M GA+G +V+V
Sbjct: 97 ---RRVVINIEEIKTPELDAQLVAESIASRIEKRASYKVAMKRAIMNAMRKGAQGIKVMV 153
Query: 446 SGKLRG-QRAKSMKFVDG-LMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKI 595
+G+L G + A+ ++ G L + DY TAT + G +GIKV I
Sbjct: 154 AGRLGGAEIARREWYLRGRLPLQKIKAIIDY-GTAT--AWTKYGTIGIKVWI 202
>UniRef50_UPI00015BD7E8 Cluster: UPI00015BD7E8 related cluster; n=1;
unknown|Rep: UPI00015BD7E8 UniRef100 entry - unknown
Length = 231
Score = 45.2 bits (102), Expect = 0.002
Identities = 40/170 (23%), Positives = 85/170 (50%), Gaps = 2/170 (1%)
Frame = +2
Query: 92 LNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIP 271
+ +++ G S V + + + + I++++ ++G KG + +L + +++ +
Sbjct: 39 IRKYIKERYKSAGISKVTIERSGEKIRVRILSSKPGIIIGRKGAEVDQLKNDLERI--VK 96
Query: 272 EQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSG 451
+ + L ++V L A AE + ++ ++ RRA + ++SGA+G +V V G
Sbjct: 97 NKDISLSVDEVRVPQLDAQLVAEDIALQIERRVSHRRAMKRAIDNAIKSGAKGIKVQVKG 156
Query: 452 KLRG-QRAKSMKFVDGLM-IHSGDPCNDYVNTATRHVLLRQGVLGIKVKI 595
++ G A++ F+ G M + + DY AT + + G+LGIKV I
Sbjct: 157 RIGGADLARAEWFLVGRMPLQTLRADIDY-GYATAYT--KYGILGIKVWI 203
>UniRef50_Q6A6N2 Cluster: 30S ribosomal protein S3; n=27;
Bacteria|Rep: 30S ribosomal protein S3 -
Propionibacterium acnes
Length = 269
Score = 44.8 bits (101), Expect = 0.002
Identities = 45/181 (24%), Positives = 82/181 (45%), Gaps = 2/181 (1%)
Frame = +2
Query: 59 KFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIREL 238
+ VG+ V ++ E+L + L G S +E+ R I + A R V+G G +
Sbjct: 30 ELVGEDV---KIREWLHKNLERAGLSSIEIERRSERVTIFLYAARPGIVIGRNGAEAERV 86
Query: 239 TSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMES 418
++K + + ++L +V + A A+ + +L +A RRA + M +
Sbjct: 87 RGELEK---LTGKQIQLNILEVKSPETDAQLVAQGIAEQLAARVAFRRAMRKAQQSAMNA 143
Query: 419 GARGCEVVVSGKLRG-QRAKSMKFVDG-LMIHSGDPCNDYVNTATRHVLLRQGVLGIKVK 592
GA G + SG+L G + ++S + +G + +H+ DY R G +G+KV
Sbjct: 144 GALGIRIKCSGRLGGAEMSRSEGYREGRVPLHTLRADIDYGFFEARTTF---GRIGVKVW 200
Query: 593 I 595
I
Sbjct: 201 I 201
>UniRef50_Q2JFH0 Cluster: 30S ribosomal protein S3; n=94;
Bacteria|Rep: 30S ribosomal protein S3 - Frankia sp.
(strain CcI3)
Length = 315
Score = 44.4 bits (100), Expect = 0.003
Identities = 34/144 (23%), Positives = 67/144 (46%)
Frame = +2
Query: 56 RKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRE 235
+ +VG+ V ++ + ++R + G S V++ T R + I R V+G +G
Sbjct: 29 KAYVGEDV---KIRKMMSRGMERAGISRVDIERTQGRLRVDIHTARPGIVIGRRGAEADR 85
Query: 236 LTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIME 415
+ ++K + + V+L +V + A A+ + +L ++ RRA ++ M+
Sbjct: 86 IRGDLEK---LTGKQVQLNILEVKNPEVDAQLVAQGVAEQLSSRVSFRRAMRKAMQTAMK 142
Query: 416 SGARGCEVVVSGKLRGQRAKSMKF 487
GA+G V SG+L G +F
Sbjct: 143 GGAKGIRVQCSGRLGGAEMSRSEF 166
>UniRef50_P0A4C3 Cluster: 30S ribosomal protein S3; n=39;
Bacteria|Rep: 30S ribosomal protein S3 - Streptococcus
pneumoniae
Length = 217
Score = 44.0 bits (99), Expect = 0.004
Identities = 41/170 (24%), Positives = 79/170 (46%), Gaps = 2/170 (1%)
Frame = +2
Query: 92 LNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIP 271
+ +F+ +ELA+ S +E+ + + + + V+G+ G + L + + K +
Sbjct: 38 IRKFVQKELADAAVSTIEIERAVNKVNVSLHTAKPGMVIGKGGANVDALRAKLNK---LT 94
Query: 272 EQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSG 451
+ V + ++ L A E + +L +A RRA ++ M +GA+G + VSG
Sbjct: 95 GKQVHINIIEIKQPDLDAHLVGEGIARQLEQRVAFRRAQKQAIQRAMRAGAKGIKTQVSG 154
Query: 452 KLRG-QRAKSMKFVDGLM-IHSGDPCNDYVNTATRHVLLRQGVLGIKVKI 595
+L G A++ + +G + +H+ DY A G LG+KV I
Sbjct: 155 RLNGADIARAEGYSEGTVPLHTLRADIDY---AWEEADTTYGKLGVKVWI 201
>UniRef50_A6NXD5 Cluster: Putative uncharacterized protein; n=1;
Bacteroides capillosus ATCC 29799|Rep: Putative
uncharacterized protein - Bacteroides capillosus ATCC
29799
Length = 283
Score = 43.6 bits (98), Expect = 0.006
Identities = 39/146 (26%), Positives = 67/146 (45%), Gaps = 2/146 (1%)
Frame = +2
Query: 65 VGDGVFK-AELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELT 241
VGD + + ++ +FL + G +E+ + I + R V+G+ G I L
Sbjct: 29 VGDLLVEDKKIRDFLKKTQYGAGIPKIEIERDNAKVRIYLHCARPGVVIGKGGEAIEALR 88
Query: 242 SVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESG 421
++K +SV L +V + A AE++ +L + RRA + M G
Sbjct: 89 LQLEKMLG---KSVALNIVEVKNPDMDAQLIAENIAQQLEKRIGFRRAMKNAMGRAMRMG 145
Query: 422 ARGCEVVVSGKLRG-QRAKSMKFVDG 496
ARG + VSG+L G + A++ + DG
Sbjct: 146 ARGIKTQVSGRLGGAEIARTEHYHDG 171
>UniRef50_P56798 Cluster: Chloroplast 30S ribosomal protein S3;
n=78; Streptophyta|Rep: Chloroplast 30S ribosomal
protein S3 - Arabidopsis thaliana (Mouse-ear cress)
Length = 218
Score = 43.6 bits (98), Expect = 0.006
Identities = 34/161 (21%), Positives = 79/161 (49%), Gaps = 2/161 (1%)
Frame = +2
Query: 125 DGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKV 304
+G + +E++ +III + ++ +K RR+ EL VQK N + + + ++
Sbjct: 58 EGIARIEIQKRIDLIQIIIYMGFPKLLIEDKPRRVEELQMNVQKELNCVNRKLNIAITRI 117
Query: 305 ATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRGQRAKSMK 484
+ AE + +L ++ R+A + ++ +G +V ++G++ G+ ++
Sbjct: 118 SNPYGDPNILAEFIAGQLKNRVSFRKAMKKAIELTEQANTKGIQVQIAGRIDGKEIARVE 177
Query: 485 FV-DG-LMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKIML 601
++ +G + + + + DY + R + GVLGIK+ I +
Sbjct: 178 WIREGRVPLQTIEAKIDYCSYTVRTI---YGVLGIKIWIFV 215
>UniRef50_P46247 Cluster: 30S ribosomal protein S3; n=3;
Entomoplasmatales|Rep: 30S ribosomal protein S3 -
Mesoplasma florum (Acholeplasma florum)
Length = 241
Score = 43.2 bits (97), Expect = 0.008
Identities = 30/137 (21%), Positives = 64/137 (46%), Gaps = 1/137 (0%)
Frame = +2
Query: 89 ELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNI 268
++ E + + L + S +++ T +II R VLG++G+ + + + VQK
Sbjct: 38 KIREGVLKLLKDAAVSKIKIERTNSNITLIIRTARPAIVLGQEGKNVSNIATAVQKIAKD 97
Query: 269 PEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVS 448
VE+ +V A A + ++ + R +R +++G +G + VS
Sbjct: 98 RNLKVEVKVIEVKNPDADATLVARWIGEQITNRASFRTVQKLAIRKALKAGVKGIKTSVS 157
Query: 449 GKLRG-QRAKSMKFVDG 496
G+L G + A++ +++G
Sbjct: 158 GRLGGVEMARTEGYIEG 174
>UniRef50_Q3ZZL8 Cluster: 30S ribosomal protein S3; n=18;
Bacteria|Rep: 30S ribosomal protein S3 - Dehalococcoides
sp. (strain CBDB1)
Length = 278
Score = 42.7 bits (96), Expect = 0.010
Identities = 45/195 (23%), Positives = 91/195 (46%), Gaps = 2/195 (1%)
Frame = +2
Query: 89 ELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNI 268
+L + ++++ + S V++ + + + R V+G G+R+ E+ ++ ++
Sbjct: 38 KLRKAISKKYVDAAISQVDIERQSNKVTVSVRTARPGIVIGRGGQRVDEMRHFLE---DL 94
Query: 269 PEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVS 448
+ V+L +++ L A A S+ ++ +A RRA + M++GA+G ++ S
Sbjct: 95 IGKKVQLNIVEISQAELDAFLVARSVAEQIERRVAYRRAMKQAIFRSMQAGAKGIKICAS 154
Query: 449 GKLRG-QRAKSMKFVDG-LMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKIMLPWDQQGK 622
G+L G + A+ +G + +H+ DY T L G +GIKV W +G
Sbjct: 155 GRLGGVEIARREVMHEGRVPLHTLRADIDYGCTRAHTAL---GDVGIKV-----WVYRGD 206
Query: 623 NGPKKPQPDHILVTE 667
P+ + VTE
Sbjct: 207 ILPEAKEKSESEVTE 221
>UniRef50_Q9PQQ4 Cluster: 30S ribosomal protein S3; n=1; Ureaplasma
parvum|Rep: 30S ribosomal protein S3 - Ureaplasma parvum
(Ureaplasma urealyticum biotype 1)
Length = 257
Score = 42.3 bits (95), Expect = 0.013
Identities = 38/171 (22%), Positives = 80/171 (46%), Gaps = 2/171 (1%)
Frame = +2
Query: 89 ELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNI 268
++ ++L+ + G VE+ R + + A ++ ++G + + + + K
Sbjct: 39 KIRKYLSTKYKNAGIDHVEIERDQQRVNVYVYAVQSGLLIGTEASEKKLIELAINKIVG- 97
Query: 269 PEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVS 448
+Q V L +V L A A + + ++ R A V++ ++++GARG + VS
Sbjct: 98 RKQLVSLKVVEVQIPELQASLMAREIADAIENRVSFRIAQKMVIKKVLKAGARGIKTHVS 157
Query: 449 GKLRG-QRAKSMKFVDGLM-IHSGDPCNDYVNTATRHVLLRQGVLGIKVKI 595
G+L G + A+ + G+M +H+ DY + + G++G+KV I
Sbjct: 158 GRLGGVEMAREEGYTQGVMTLHTLRADIDY---SMQEAHTTYGIIGVKVWI 205
>UniRef50_Q04G79 Cluster: 30S ribosomal protein S3; n=1; Oenococcus
oeni PSU-1|Rep: 30S ribosomal protein S3 - Oenococcus
oeni (strain BAA-331 / PSU-1)
Length = 267
Score = 42.3 bits (95), Expect = 0.013
Identities = 40/174 (22%), Positives = 75/174 (43%), Gaps = 6/174 (3%)
Frame = +2
Query: 92 LNEFLTRELAEDGYSGVEV-RVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQK---R 259
+ ++L L + + + R P R + I + V+G G + L S + K
Sbjct: 39 IRKYLETNLKDAAVDRITIERTEPTRINLTIHTAKPGIVIGRGGADVERLRSELSKIVDT 98
Query: 260 FNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEV 439
+ + V + ++ L A + + L +A RRA G ++ + +GA+G
Sbjct: 99 YKGQHKRVNINIVEIRKPDLNAHLVGQQIAADLERRVAFRRAMRGAIQRVQRAGAKGVRT 158
Query: 440 VVSGKLRG-QRAKSMKFVDGLM-IHSGDPCNDYVNTATRHVLLRQGVLGIKVKI 595
+VSG+L G A+ ++ +G + +H+ DY + + G LGIK I
Sbjct: 159 MVSGRLNGADIARKEQYTEGTVPLHTLRADIDY---SWDEAMTSYGNLGIKTWI 209
>UniRef50_Q2GED3 Cluster: 30S ribosomal protein S3; n=1;
Neorickettsia sennetsu str. Miyayama|Rep: 30S ribosomal
protein S3 - Neorickettsia sennetsu (strain Miyayama)
Length = 211
Score = 41.1 bits (92), Expect = 0.031
Identities = 42/172 (24%), Positives = 80/172 (46%), Gaps = 4/172 (2%)
Frame = +2
Query: 92 LNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFN-I 268
+ +++ A G S V ++ +I + + ++G+KG + + K+F +
Sbjct: 39 VTKYVESSFAHIGISKVIIKRKGASCDITLHCMKPGLIIGKKGADLESFRLKLNKKFGFV 98
Query: 269 PEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIM-ESGARGCEVVV 445
P +V +V A+ A+S+ ++L + RR + +M ES +G +V
Sbjct: 99 PSLNV----VEVKKPNSSAVLVAKSIAFQLEKRSSFRRVIKKAIATVMRESDVKGVKVAC 154
Query: 446 SGKLRG-QRAKSMKFVDG-LMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKI 595
SG+L G + A++ F +G + +H+ DY A H GV+G+KV I
Sbjct: 155 SGRLSGAEIARTEVFKEGSIPLHTMRADIDYW-VAEAHT--TYGVIGVKVWI 203
>UniRef50_Q9XD30 Cluster: 30S ribosomal protein S3; n=4;
Leptospira|Rep: 30S ribosomal protein S3 - Leptospira
interrogans
Length = 225
Score = 38.7 bits (86), Expect = 0.16
Identities = 27/125 (21%), Positives = 53/125 (42%)
Frame = +2
Query: 89 ELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNI 268
++ +F+ G V + P + + + + V+G+KG I + +++ +
Sbjct: 37 KIRKFVQNRFNNAGVVKVVIERFPEKINVNLHTAKPGIVIGQKGANIEAVKKILKTMTDK 96
Query: 269 PEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVS 448
P + +K T C AES+ ++ RR LR M G G ++++S
Sbjct: 97 PVNLNIIEVKKPETVAQCI---AESIALQIEQRQPFRRVMKQELRRAMRGGVEGIKILIS 153
Query: 449 GKLRG 463
G+L G
Sbjct: 154 GRLNG 158
>UniRef50_Q11HQ8 Cluster: 30S ribosomal protein S3; n=167; cellular
organisms|Rep: 30S ribosomal protein S3 - Mesorhizobium
sp. (strain BNC1)
Length = 235
Score = 38.3 bits (85), Expect = 0.22
Identities = 40/169 (23%), Positives = 74/169 (43%), Gaps = 2/169 (1%)
Frame = +2
Query: 89 ELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNI 268
++ ++ EL + S V + + + I + R ++G+KG I +L + + N
Sbjct: 38 KIRTYIENELKQAAISKVVIERPHKKCRVTIHSARPGLIIGKKGADIEKLRRKITQMTNA 97
Query: 269 PEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVS 448
L +V + A A+S+ +L +A RRA ++ M GA G + +
Sbjct: 98 ---ETHLNIVEVRKPEIDARLIAQSIAQQLERRVAFRRAMKRAVQSAMRLGAEGIRINCT 154
Query: 449 GKLRG-QRAKSMKFVDG-LMIHSGDPCNDYVNTATRHVLLRQGVLGIKV 589
G+L G + A+ + +G + +H+ DY T GV G+KV
Sbjct: 155 GRLGGAEIARIEWYREGRVPLHTLRADIDY---GTAEAKTAYGVCGVKV 200
>UniRef50_Q20F10 Cluster: Chloroplast 30S ribosomal protein S3; n=2;
Chlorophyta|Rep: Chloroplast 30S ribosomal protein S3 -
Oltmannsiellopsis viridis (Marine flagellate)
Length = 235
Score = 38.3 bits (85), Expect = 0.22
Identities = 42/161 (26%), Positives = 68/161 (42%), Gaps = 11/161 (6%)
Frame = +2
Query: 140 VEVRVTPIRSEIIIMATRTQSVLGEKGR---RIRELTSVVQKRFN--------IPEQSVE 286
++ +V + E+ I TR ++G K + ++++L +Q N P V
Sbjct: 57 IQRKVDRTQVEVEIRTTRPGLLVGRKRQNCDKLKQLRDELQVELNKFRAKNGVSPTAKVA 116
Query: 287 LYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRGQ 466
L V + AI AE L +L +A RRA VL I +G ++ VSG+L G
Sbjct: 117 LQVTTVQNKSSEAIVIAEFLVNQLERRIAFRRALRRVLSIIQRDRVQGAKIQVSGRLNGA 176
Query: 467 RAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKV 589
+++ + D V+ R G+LGIKV
Sbjct: 177 EIARSEWIRTGRVPLQTLRAD-VDYCHREAKTIYGILGIKV 216
>UniRef50_A0MNG0 Cluster: Putative uncharacterized protein; n=1;
Thermus phage phiYS40|Rep: Putative uncharacterized
protein - Thermus phage phiYS40
Length = 1014
Score = 37.9 bits (84), Expect = 0.29
Identities = 26/102 (25%), Positives = 51/102 (50%)
Frame = +2
Query: 8 FSAPVAIMAVNNISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMA 187
FS ++ + ++ + + + +FK+E FL+R L+E Y+ ++ RS I
Sbjct: 205 FSEFRSLFELAKSTRNQLSISERIFKSEREIFLSRTLSEF-YNESLNAISIARSNFIAQL 263
Query: 188 TRTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVATR 313
R L +K + E+ + ++RFN + +LYAE++ R
Sbjct: 264 NRVNESL-QKAQSPEEVARLQEERFNYLKSLTQLYAEELKIR 304
>UniRef50_A7R9B1 Cluster: Chromosome undetermined scaffold_3592,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome undetermined scaffold_3592, whole genome
shotgun sequence - Vitis vinifera (Grape)
Length = 207
Score = 36.3 bits (80), Expect = 0.87
Identities = 32/146 (21%), Positives = 69/146 (47%), Gaps = 2/146 (1%)
Frame = +2
Query: 170 EIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLR 349
++II + ++ K RRI EL VQK N + + + ++ AE +
Sbjct: 62 QVIIYMGFPKLLVEGKPRRIEELQMNVQKELNYVNRKLNIAITRITKPYGHPNILAEFIA 121
Query: 350 YKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRGQRAKSMKFV-DG-LMIHSGDPC 523
+L ++ R+A + ++ +G +V ++G++ G+ ++++ +G + + +
Sbjct: 122 GQLRNRVSFRKAIKKAIELTEQADTKGIQVQIAGRIDGKEIARVEWIREGRVPLQTIRAK 181
Query: 524 NDYVNTATRHVLLRQGVLGIKVKIML 601
DY + R + GVLGIK+ I +
Sbjct: 182 IDYCSYRVRTI---YGVLGIKIWIFV 204
>UniRef50_A5AUQ8 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 617
Score = 36.3 bits (80), Expect = 0.87
Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Frame = +2
Query: 176 IIMATRTQSVLGEK-GRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRY 352
+I TRT S+ + ++IREL SV Q +I + + A A RGL A+ ES+R
Sbjct: 101 VIRQTRTLSMTSAQFPKKIRELQSVTQSYVSIDATTKDKAAALAAARGLGRNAKIESVRL 160
Query: 353 KLIGGLAVRRACYGVLRFIMESGARG 430
++ L + +C G+ M + + G
Sbjct: 161 PMLTVLKL-HSCEGITSASMAAISHG 185
>UniRef50_Q6YR15 Cluster: 30S ribosomal protein S3; n=163;
Firmicutes|Rep: 30S ribosomal protein S3 - Onion yellows
phytoplasma
Length = 252
Score = 36.3 bits (80), Expect = 0.87
Identities = 37/146 (25%), Positives = 69/146 (47%), Gaps = 2/146 (1%)
Frame = +2
Query: 164 RSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAES 343
R I + + ++G+ G +L V K + ++ V L +V A+ A++
Sbjct: 67 RITISVHTAKPGVIIGKDGDTRNKL---VAKLKELTQKDVNLNVLEVKNSDKIALLIAQN 123
Query: 344 LRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRG-QRAKSMKFVDG-LMIHSGD 517
+ +L + RR ++ +++GA+G + ++SG+L G + A+S +G + +H+
Sbjct: 124 MAEQLENRMFFRRVQKMAIQKALKAGAKGVKTLISGRLGGAEIARSEGHAEGRVPLHTLR 183
Query: 518 PCNDYVNTATRHVLLRQGVLGIKVKI 595
DY A GVLGIKV I
Sbjct: 184 ADIDY---AAVEAHTTYGVLGIKVWI 206
>UniRef50_Q52188 Cluster: TraC precursor; n=9; root|Rep: TraC
precursor - Enterococcus faecalis (Streptococcus
faecalis)
Length = 545
Score = 35.5 bits (78), Expect = 1.5
Identities = 15/40 (37%), Positives = 26/40 (65%)
Frame = +2
Query: 62 FVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIII 181
FVGDG F+ + EFL +L E+ G++V +TP+ + + +
Sbjct: 397 FVGDGEFEKKAGEFLQGQL-EENLEGLKVNITPVPANVFM 435
>UniRef50_Q6ZS94 Cluster: CDNA FLJ45717 fis, clone FELNG2001613;
n=1; Homo sapiens|Rep: CDNA FLJ45717 fis, clone
FELNG2001613 - Homo sapiens (Human)
Length = 237
Score = 35.1 bits (77), Expect = 2.0
Identities = 18/47 (38%), Positives = 19/47 (40%)
Frame = +1
Query: 553 CASQARSTRNQGQNHVAVGPARQERPEEATTRPHPGNRAQGRARAPR 693
CAS RS R Q Q P P A RP PG+ APR
Sbjct: 114 CASSDRSLREQKQRRAGPDPTPSPAPPPAGPRPSPGSLGPSAPAAPR 160
>UniRef50_Q9U982 Cluster: Drosophila dodeca-satellite protein 1;
n=9; Endopterygota|Rep: Drosophila dodeca-satellite
protein 1 - Drosophila melanogaster (Fruit fly)
Length = 1301
Score = 34.7 bits (76), Expect = 2.7
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Frame = +2
Query: 155 TPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLC-AIA 331
T ++ + + +LG+ G+R+RE+ V R NIP QS E +E + G IA
Sbjct: 167 TQASRQVTVPREHFRVILGKGGQRLREIERVTATRINIPSQSDE--SEFITIAGTKEGIA 224
Query: 332 QAE 340
QAE
Sbjct: 225 QAE 227
>UniRef50_Q9XDW7 Cluster: PsbAa; n=1; Rhodopseudomonas
palustris|Rep: PsbAa - Rhodopseudomonas palustris
Length = 403
Score = 29.1 bits (62), Expect(2) = 3.1
Identities = 22/61 (36%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Frame = +2
Query: 269 PEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGA--RGCEVV 442
P + L KVA L I A +LR +LI G V GV+ + + A RGCEV
Sbjct: 114 PRRLAALEGTKVAVHYLRGIDDALTLRPQLIEGHRVALVGGGVIGLEVAAAALSRGCEVT 173
Query: 443 V 445
+
Sbjct: 174 I 174
Score = 24.2 bits (50), Expect(2) = 3.1
Identities = 12/55 (21%), Positives = 26/55 (47%)
Frame = +2
Query: 425 RGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKV 589
RG ++ +L GQ+ S+ DG ++ + + + L+ G+ G++V
Sbjct: 201 RGAAILCKAELSGQQTHSLTLADGRVVDADVIVVGIGSEPAGELALQIGLAGVQV 255
>UniRef50_UPI0000DA2268 Cluster: PREDICTED: hypothetical protein;
n=2; Rattus norvegicus|Rep: PREDICTED: hypothetical
protein - Rattus norvegicus
Length = 328
Score = 34.3 bits (75), Expect = 3.5
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = +1
Query: 331 PGRISKIQAYRRSRCTSCLLWCSPFHH 411
PGR +A RRSRC+ C W HH
Sbjct: 240 PGRDWSAEASRRSRCSRCCTWSGDIHH 266
>UniRef50_Q5YTC3 Cluster: Putative uncharacterized protein; n=1;
Nocardia farcinica|Rep: Putative uncharacterized protein
- Nocardia farcinica
Length = 1172
Score = 33.1 bits (72), Expect = 8.1
Identities = 20/52 (38%), Positives = 24/52 (46%)
Frame = +1
Query: 544 YQTCASQARSTRNQGQNHVAVGPARQERPEEATTRPHPGNRAQGRARAPRAD 699
+Q +A + R + A G AR E P A T P PG R RA RAD
Sbjct: 592 FQPTGRRAAAERADAHDTAAEGHARTEPPRGAVTEPAPGGR---RAAGQRAD 640
>UniRef50_Q39682 Cluster: Glycine-rich protein; n=1; Daucus
carota|Rep: Glycine-rich protein - Daucus carota
(Carrot)
Length = 111
Score = 33.1 bits (72), Expect = 8.1
Identities = 13/35 (37%), Positives = 14/35 (40%)
Frame = +1
Query: 391 WCSPFHHGIWCPWL*SCCIWQAAWSTCQINEVCRW 495
W P G WC W C IW S C+ RW
Sbjct: 32 WWIPPRRGRWCWWRCRCWIWSRLRSWCRSRRRIRW 66
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 800,968,083
Number of Sequences: 1657284
Number of extensions: 17242580
Number of successful extensions: 57878
Number of sequences better than 10.0: 73
Number of HSP's better than 10.0 without gapping: 54457
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57734
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 66673674990
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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