Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc2c11
(787 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_29492| Best HMM Match : Ribosomal_S3_C (HMM E-Value=1.8e-28) 396 e-111
SB_1330| Best HMM Match : Phage_Coat_Gp8 (HMM E-Value=1.9) 36 0.028
SB_14482| Best HMM Match : Cornifin (HMM E-Value=3.7) 31 1.1
SB_27312| Best HMM Match : Pox_A32 (HMM E-Value=0.012) 31 1.4
SB_43553| Best HMM Match : Gp-FAR-1 (HMM E-Value=0.29) 29 3.2
SB_42203| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.2
SB_57373| Best HMM Match : DUF292 (HMM E-Value=4.7) 29 4.3
SB_48415| Best HMM Match : Pox_A32 (HMM E-Value=0.014) 29 4.3
SB_28852| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.3
SB_3270| Best HMM Match : MMPL (HMM E-Value=0.68) 29 4.3
SB_1988| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.3
SB_51602| Best HMM Match : Glyco_hydro_38C (HMM E-Value=1.1e-31) 29 4.3
SB_20734| Best HMM Match : Abi_HHR (HMM E-Value=3.59994e-42) 29 4.3
SB_7014| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.6
SB_59749| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.5
SB_56796| Best HMM Match : CITED (HMM E-Value=1.2) 28 7.5
SB_53228| Best HMM Match : CITED (HMM E-Value=2.5) 28 7.5
SB_15943| Best HMM Match : Pox_A32 (HMM E-Value=0.027) 28 7.5
SB_15117| Best HMM Match : Pox_A32 (HMM E-Value=0.038) 28 7.5
SB_10611| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.5
SB_1260| Best HMM Match : Phage_Coat_Gp8 (HMM E-Value=1.3) 28 7.5
SB_58633| Best HMM Match : Phage_Coat_Gp8 (HMM E-Value=2.8) 28 7.5
SB_37846| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.5
SB_30346| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.5
SB_19127| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.5
SB_9870| Best HMM Match : GspM (HMM E-Value=1.9) 28 7.5
SB_5898| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.5
SB_45789| Best HMM Match : E-MAP-115 (HMM E-Value=1.8) 28 9.9
SB_41411| Best HMM Match : RVT_1 (HMM E-Value=0.00044) 28 9.9
SB_29024| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.9
SB_23541| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.9
SB_22738| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.9
SB_15878| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.9
>SB_29492| Best HMM Match : Ribosomal_S3_C (HMM E-Value=1.8e-28)
Length = 240
Score = 396 bits (976), Expect = e-111
Identities = 190/221 (85%), Positives = 202/221 (91%)
Frame = +2
Query: 44 ISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGR 223
ISKKRKFV DG+FKAELNEFLTRELAEDGYSGVEVRVTPIR+EIII+ATRTQ+VLGEKGR
Sbjct: 5 ISKKRKFVADGLFKAELNEFLTRELAEDGYSGVEVRVTPIRTEIIILATRTQNVLGEKGR 64
Query: 224 RIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLR 403
RIRELTSVVQKRF PE SVELYAEKVATRGLCAIAQ ESLRYKLIGGLAVRRACYGVLR
Sbjct: 65 RIRELTSVVQKRFGFPEGSVELYAEKVATRGLCAIAQCESLRYKLIGGLAVRRACYGVLR 124
Query: 404 FIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGI 583
FIMESGA+GCEVVVSGKLRGQRAKSMKFVDGLM+H+G+P YV+TA RHV LRQGVLGI
Sbjct: 125 FIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMVHAGEPTTHYVDTAVRHVYLRQGVLGI 184
Query: 584 KVKIMLPWDQQGKNGPKKPQPDHILVTEPKDEPVPLEPTSE 706
KVKIMLPWD GK GPKKP PD + + EPKDE VP +PTSE
Sbjct: 185 KVKIMLPWDPTGKTGPKKPLPDQVSIVEPKDEVVPAQPTSE 225
>SB_1330| Best HMM Match : Phage_Coat_Gp8 (HMM E-Value=1.9)
Length = 482
Score = 36.3 bits (80), Expect = 0.028
Identities = 17/30 (56%), Positives = 17/30 (56%)
Frame = +1
Query: 598 VAVGPARQERPEEATTRPHPGNRAQGRARA 687
VA GPAR PE TRPHPG GR A
Sbjct: 107 VAAGPARITSPEPPATRPHPGRVEAGRRLA 136
>SB_14482| Best HMM Match : Cornifin (HMM E-Value=3.7)
Length = 301
Score = 31.1 bits (67), Expect = 1.1
Identities = 14/26 (53%), Positives = 14/26 (53%)
Frame = +1
Query: 610 PARQERPEEATTRPHPGNRAQGRARA 687
PAR PE TRPHPG GR A
Sbjct: 42 PARVTSPEPPATRPHPGRVEAGRRLA 67
>SB_27312| Best HMM Match : Pox_A32 (HMM E-Value=0.012)
Length = 1115
Score = 30.7 bits (66), Expect = 1.4
Identities = 14/26 (53%), Positives = 14/26 (53%)
Frame = +1
Query: 610 PARQERPEEATTRPHPGNRAQGRARA 687
PAR PE TRPHPG GR A
Sbjct: 537 PARITSPEPPATRPHPGRVEAGRRLA 562
>SB_43553| Best HMM Match : Gp-FAR-1 (HMM E-Value=0.29)
Length = 1851
Score = 29.5 bits (63), Expect = 3.2
Identities = 14/27 (51%), Positives = 14/27 (51%)
Frame = +1
Query: 601 AVGPARQERPEEATTRPHPGNRAQGRA 681
A AR PE TRPHPG GRA
Sbjct: 1497 AARDARITSPEPPATRPHPGRVEAGRA 1523
>SB_42203| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 228
Score = 29.5 bits (63), Expect = 3.2
Identities = 11/41 (26%), Positives = 19/41 (46%)
Frame = +1
Query: 307 YSWSLRYRPGRISKIQAYRRSRCTSCLLWCSPFHHGIWCPW 429
Y+W L + P + ++ Y R + L C+P + W W
Sbjct: 4 YNWWLAWNPALLCLMRQYNRWLAWNPALLCNPRQYNRWLAW 44
>SB_57373| Best HMM Match : DUF292 (HMM E-Value=4.7)
Length = 383
Score = 29.1 bits (62), Expect = 4.3
Identities = 28/72 (38%), Positives = 39/72 (54%), Gaps = 6/72 (8%)
Frame = +2
Query: 98 EFLTRELAEDGYSGVEVR--VTPIR----SEIIIMATRTQSVLGEKGRRIRELTSVVQKR 259
E+L R++ D YS E +TP +IMA R QSVL ++GR +LT Q+R
Sbjct: 175 EYLQRKI-NDAYSPEEAEKNITPYSLCSYENPMIMAFRLQSVLRKRGR--DDLT-WAQQR 230
Query: 260 FNIPEQSVELYA 295
F+ SVE +A
Sbjct: 231 FDDLADSVEQFA 242
>SB_48415| Best HMM Match : Pox_A32 (HMM E-Value=0.014)
Length = 988
Score = 29.1 bits (62), Expect = 4.3
Identities = 17/42 (40%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Frame = +1
Query: 568 RSTRNQGQNHVAVGPA--RQERPEEATTRPHPGNRAQGRARA 687
+ R + VA PA R PE TRPHPG GR A
Sbjct: 801 KQRREPARTPVAALPAAARVTSPEPPATRPHPGRVEAGRRLA 842
>SB_28852| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3172
Score = 29.1 bits (62), Expect = 4.3
Identities = 16/70 (22%), Positives = 34/70 (48%)
Frame = +2
Query: 128 GYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVA 307
GY+ + + S +++ A +++ ++ + +RE +QKRF E+ +Y
Sbjct: 1941 GYTARKEYSRCVTSIVLMQALVRRNLAVKRYQALREAAIGIQKRFRAKEEGKLVYLMFHI 2000
Query: 308 TRGLCAIAQA 337
RG C + Q+
Sbjct: 2001 QRGACIVIQS 2010
>SB_3270| Best HMM Match : MMPL (HMM E-Value=0.68)
Length = 401
Score = 29.1 bits (62), Expect = 4.3
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = +1
Query: 448 WQAAWSTCQINEVCRWTHDPLW 513
W+ AW+ C + E +T++P W
Sbjct: 76 WKQAWTPCSLQETTIYTNNPPW 97
>SB_1988| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3889
Score = 29.1 bits (62), Expect = 4.3
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = -1
Query: 763 ILSDSGDRLRQRRGREGAHFAGRLEGHGL 677
+LS +GD +R GRE HF + HGL
Sbjct: 769 VLSSNGDFIRSFGGRESMHFRYCVYSHGL 797
>SB_51602| Best HMM Match : Glyco_hydro_38C (HMM E-Value=1.1e-31)
Length = 976
Score = 29.1 bits (62), Expect = 4.3
Identities = 10/26 (38%), Positives = 12/26 (46%)
Frame = +1
Query: 442 CIWQAAWSTCQINEVCRWTHDPLWRP 519
C W + W + E WTH P RP
Sbjct: 185 CRWLSQWKQSEEEESVLWTHSPARRP 210
>SB_20734| Best HMM Match : Abi_HHR (HMM E-Value=3.59994e-42)
Length = 426
Score = 29.1 bits (62), Expect = 4.3
Identities = 9/27 (33%), Positives = 18/27 (66%)
Frame = +1
Query: 571 STRNQGQNHVAVGPARQERPEEATTRP 651
+++N + H + PA+QE+PE + +P
Sbjct: 162 TSKNTSRTHKIIAPAKQEKPERYSRKP 188
>SB_7014| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 509
Score = 28.7 bits (61), Expect = 5.6
Identities = 13/26 (50%), Positives = 13/26 (50%)
Frame = +1
Query: 610 PARQERPEEATTRPHPGNRAQGRARA 687
P R PE TRPHPG GR A
Sbjct: 185 PPRITSPEPPATRPHPGRVEAGRRLA 210
>SB_59749| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1091
Score = 28.3 bits (60), Expect = 7.5
Identities = 14/29 (48%), Positives = 14/29 (48%)
Frame = +1
Query: 601 AVGPARQERPEEATTRPHPGNRAQGRARA 687
A AR PE TRPHPG GR A
Sbjct: 820 AARDARITSPEPPATRPHPGRVEAGRRLA 848
>SB_56796| Best HMM Match : CITED (HMM E-Value=1.2)
Length = 431
Score = 28.3 bits (60), Expect = 7.5
Identities = 14/29 (48%), Positives = 14/29 (48%)
Frame = +1
Query: 601 AVGPARQERPEEATTRPHPGNRAQGRARA 687
A AR PE TRPHPG GR A
Sbjct: 42 AARDARITSPEPPATRPHPGRVEAGRRLA 70
>SB_53228| Best HMM Match : CITED (HMM E-Value=2.5)
Length = 417
Score = 28.3 bits (60), Expect = 7.5
Identities = 14/29 (48%), Positives = 14/29 (48%)
Frame = +1
Query: 601 AVGPARQERPEEATTRPHPGNRAQGRARA 687
A AR PE TRPHPG GR A
Sbjct: 168 AARDARITSPEPPATRPHPGRVEAGRRLA 196
>SB_15943| Best HMM Match : Pox_A32 (HMM E-Value=0.027)
Length = 804
Score = 28.3 bits (60), Expect = 7.5
Identities = 13/25 (52%), Positives = 13/25 (52%)
Frame = +1
Query: 613 ARQERPEEATTRPHPGNRAQGRARA 687
AR PE TRPHPG GR A
Sbjct: 604 ARVTSPEPPATRPHPGRVEAGRRLA 628
>SB_15117| Best HMM Match : Pox_A32 (HMM E-Value=0.038)
Length = 771
Score = 28.3 bits (60), Expect = 7.5
Identities = 14/29 (48%), Positives = 14/29 (48%)
Frame = +1
Query: 601 AVGPARQERPEEATTRPHPGNRAQGRARA 687
A AR PE TRPHPG GR A
Sbjct: 386 AARDARITSPEPPATRPHPGRVEAGRRLA 414
>SB_10611| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1134
Score = 28.3 bits (60), Expect = 7.5
Identities = 12/21 (57%), Positives = 12/21 (57%)
Frame = +1
Query: 625 RPEEATTRPHPGNRAQGRARA 687
RPE TRPHPG GR A
Sbjct: 546 RPEPPATRPHPGRVEAGRRLA 566
>SB_1260| Best HMM Match : Phage_Coat_Gp8 (HMM E-Value=1.3)
Length = 220
Score = 28.3 bits (60), Expect = 7.5
Identities = 14/29 (48%), Positives = 14/29 (48%)
Frame = +1
Query: 601 AVGPARQERPEEATTRPHPGNRAQGRARA 687
A AR PE TRPHPG GR A
Sbjct: 42 AARDARITSPEPPATRPHPGRVEAGRRLA 70
>SB_58633| Best HMM Match : Phage_Coat_Gp8 (HMM E-Value=2.8)
Length = 599
Score = 28.3 bits (60), Expect = 7.5
Identities = 14/29 (48%), Positives = 14/29 (48%)
Frame = +1
Query: 601 AVGPARQERPEEATTRPHPGNRAQGRARA 687
A AR PE TRPHPG GR A
Sbjct: 425 AARDARITSPEPPATRPHPGRVEAGRRLA 453
>SB_37846| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 458
Score = 28.3 bits (60), Expect = 7.5
Identities = 14/29 (48%), Positives = 14/29 (48%)
Frame = +1
Query: 601 AVGPARQERPEEATTRPHPGNRAQGRARA 687
A AR PE TRPHPG GR A
Sbjct: 284 AARDARITSPEPPATRPHPGRVEAGRRLA 312
>SB_30346| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 148
Score = 28.3 bits (60), Expect = 7.5
Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
Frame = -1
Query: 193 PGGHNNDLRAD--GSDPHFHAGVPVLGQLPSEELIEFCLEN 77
P H + D G DP VP L LP + + E CL++
Sbjct: 63 PYAHGSQYAMDSRGMDPGMRDEVPALHHLPPQSMFEECLDH 103
>SB_19127| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1492
Score = 28.3 bits (60), Expect = 7.5
Identities = 13/25 (52%), Positives = 13/25 (52%)
Frame = +1
Query: 613 ARQERPEEATTRPHPGNRAQGRARA 687
AR PE TRPHPG GR A
Sbjct: 1351 ARITSPEPPATRPHPGRVGAGRRLA 1375
>SB_9870| Best HMM Match : GspM (HMM E-Value=1.9)
Length = 522
Score = 28.3 bits (60), Expect = 7.5
Identities = 13/25 (52%), Positives = 13/25 (52%)
Frame = +1
Query: 613 ARQERPEEATTRPHPGNRAQGRARA 687
AR PE TRPHPG GR A
Sbjct: 181 ARVTSPEPPATRPHPGRVEAGRRLA 205
>SB_5898| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1109
Score = 28.3 bits (60), Expect = 7.5
Identities = 14/29 (48%), Positives = 14/29 (48%)
Frame = +1
Query: 601 AVGPARQERPEEATTRPHPGNRAQGRARA 687
A AR PE TRPHPG GR A
Sbjct: 781 AAHDARITSPEPPATRPHPGRVEAGRRLA 809
>SB_45789| Best HMM Match : E-MAP-115 (HMM E-Value=1.8)
Length = 519
Score = 27.9 bits (59), Expect = 9.9
Identities = 13/32 (40%), Positives = 15/32 (46%)
Frame = -2
Query: 705 SLVGSRGTGSSLGSVTRMWSGCGFFGPFLPCW 610
S+ S G GSSLGS+ R W P W
Sbjct: 215 SIASSLGLGSSLGSMGRDWGRMSTNSPSFQSW 246
>SB_41411| Best HMM Match : RVT_1 (HMM E-Value=0.00044)
Length = 647
Score = 27.9 bits (59), Expect = 9.9
Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Frame = +2
Query: 434 EVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQG-VLGIKVKIMLPWD 610
E + S + R++ MK + GL + CN+ +T VL + G +L K +I W
Sbjct: 236 EEIASEAEKAARSQHMKTLYGL---TKKLCNERPRHSTA-VLDKDGNLLSKKEEIQRRWT 291
Query: 611 QQGKNGPKKPQPDHILVTEPKDE 679
+ + K+ QPD+ + EP+DE
Sbjct: 292 EHFREVLKREQPDNPI--EPEDE 312
>SB_29024| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 998
Score = 27.9 bits (59), Expect = 9.9
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = -1
Query: 274 LWNVESLLYYGSQLTDSASFLSEHTLCPGGHNNDLRADGSDPH 146
LWN++ + + F + H+ C GG N D A GS+ H
Sbjct: 186 LWNIKDRVLERKYQGVTQGFYTIHS-CFGGVNQDFLASGSEDH 227
>SB_23541| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 957
Score = 27.9 bits (59), Expect = 9.9
Identities = 13/25 (52%), Positives = 13/25 (52%)
Frame = +1
Query: 613 ARQERPEEATTRPHPGNRAQGRARA 687
AR PE TRPHPG GR A
Sbjct: 792 ARITSPEPPATRPHPGRVEAGRRLA 816
>SB_22738| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 296
Score = 27.9 bits (59), Expect = 9.9
Identities = 19/74 (25%), Positives = 31/74 (41%), Gaps = 2/74 (2%)
Frame = +2
Query: 431 CEVVVSGKLRGQRAKSMKFVDGLMIHSG--DPCNDYVNTATRHVLLRQGVLGIKVKIMLP 604
CE + + KL+ +K+ + G + D C+ ++N + Q LGIK+ L
Sbjct: 136 CEWLTANKLQFHPSKTKSMIIGSSYNLAKIDQCSVFINNTEVTRVKSQKCLGIKIDDKLN 195
Query: 605 WDQQGKNGPKKPQP 646
W KK P
Sbjct: 196 WGNHIDKFCKKAGP 209
>SB_15878| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1929
Score = 27.9 bits (59), Expect = 9.9
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = +2
Query: 578 GIKVKIMLPWDQQGKNGPKKPQ-PDHILVTEPKDEPVPLEPTSEVRS 715
G+K+K+ML D+ G + P P+ P P + P E S +S
Sbjct: 1628 GLKIKLMLKKDRSGGSSPVSPRSPSPCEPRLPLESRSPFESNSSFQS 1674
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,079,119
Number of Sequences: 59808
Number of extensions: 559788
Number of successful extensions: 1759
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 1596
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1747
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2155861620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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