Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc2c10
         (364 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P41479 Cluster: Uncharacterized 24.1 kDa protein in LEF...    99   2e-20
UniRef50_O10341 Cluster: Uncharacterized 29.3 kDa protein; n=7; ...    71   6e-12
UniRef50_Q24NK2 Cluster: Uncharacterized component of anaerobic ...    31   8.3  

>UniRef50_P41479 Cluster: Uncharacterized 24.1 kDa protein in
           LEF4-P33 intergenic region; n=4;
           Nucleopolyhedrovirus|Rep: Uncharacterized 24.1 kDa
           protein in LEF4-P33 intergenic region - Autographa
           californica nuclear polyhedrosis virus (AcMNPV)
          Length = 224

 Score = 99.1 bits (236), Expect = 2e-20
 Identities = 39/49 (79%), Positives = 45/49 (91%)
 Frame = +3

Query: 207 PLGKPMYFPSNINTNKALTDFLRPLCETDQTRKTYAVPWNCNNIFHCNY 353
           PLG+PMY+PSNI+TN+AL +FLRPLC TD+TR TYAVPWNCN IFHCNY
Sbjct: 138 PLGEPMYYPSNIDTNEALINFLRPLCATDRTRATYAVPWNCNGIFHCNY 186


>UniRef50_O10341 Cluster: Uncharacterized 29.3 kDa protein; n=7;
           Nucleopolyhedrovirus|Rep: Uncharacterized 29.3 kDa
           protein - Orgyia pseudotsugata multicapsid polyhedrosis
           virus (OpMNPV)
          Length = 279

 Score = 70.9 bits (166), Expect = 6e-12
 Identities = 27/50 (54%), Positives = 36/50 (72%), Gaps = 1/50 (2%)
 Frame = +3

Query: 207 PLGKPMYFPSNINTNKALTDFLRPLCE-TDQTRKTYAVPWNCNNIFHCNY 353
           PLG PMYFPS++ T   L D++RPLC    + R+TYAVPW+C  + HC+Y
Sbjct: 191 PLGDPMYFPSSVGTTDQLRDYIRPLCNGWPRPRETYAVPWDCQRVMHCSY 240


>UniRef50_Q24NK2 Cluster: Uncharacterized component of anaerobic
           dehydrogenase; n=1; Desulfitobacterium hafniense
           Y51|Rep: Uncharacterized component of anaerobic
           dehydrogenase - Desulfitobacterium hafniense (strain
           Y51)
          Length = 224

 Score = 30.7 bits (66), Expect = 8.3
 Identities = 18/46 (39%), Positives = 21/46 (45%)
 Frame = +3

Query: 204 KPLGKPMYFPSNINTNKALTDFLRPLCETDQTRKTYAVPWNCNNIF 341
           KPL K   FP      +AL DFLR L  TD       + W  N +F
Sbjct: 42  KPLQKDFQFPEE----EALFDFLRQLTSTDLELLQKELTWEFNRLF 83


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 201,534,406
Number of Sequences: 1657284
Number of extensions: 2367516
Number of successful extensions: 5422
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5353
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5421
length of database: 575,637,011
effective HSP length: 90
effective length of database: 426,481,451
effective search space used: 12794443530
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)