Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc2c09
         (808 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos...   110   3e-25
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    31   0.25 
SPAC22A12.01c |pso2|snm1, SPAC56F8.17c, snm1|DNA 5' exonuclease ...    29   0.59 
SPBC29A10.14 |rec8||meiotic cohesin complex subunit Rec8|Schizos...    29   0.78 
SPAC20G8.08c |fft1||fun thirty related protein Fft1|Schizosaccha...    27   2.4  
SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr 1|||M...    27   2.4  
SPBC16E9.01c |php4|SPBP16F5.09c|CCAAT-binding factor complex sub...    27   4.1  
SPAPJ691.02 |||yippee-like protein|Schizosaccharomyces pombe|chr...    26   5.5  
SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1 |S...    26   7.2  
SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Sch...    26   7.2  
SPCC553.10 |||conserved fungal protein|Schizosaccharomyces pombe...    25   9.6  

>SPBC18H10.03 |tif35||translation initiation factor
           eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 282

 Score =  110 bits (264), Expect = 3e-25
 Identities = 73/237 (30%), Positives = 118/237 (49%), Gaps = 17/237 (7%)
 Frame = +3

Query: 144 WADEVEIDQGVLPPPSEVVEN--GLKIVTEYKYDNDNKKVKIVRTYK---IEKRVVSKSI 308
           WAD+ +   G+  P  +  +N  G K + E++ D++ KKVK+ R  +   I +RV   ++
Sbjct: 9   WADDEDYGTGL--PSIQTFDNPDGTKTMIEFRIDDNGKKVKVTRVIRKTVITERV-QHAV 65

Query: 309 AKRKTWSKFGDSASDKPGPNPATTNVAEDVFMQ----FITSKEESQRPDDGELDGLK-PP 473
           A+RK W KFG  A    G +  TT+V E+V ++    + T+KEE Q  D+  L   K   
Sbjct: 66  AERKKWKKFGKEAGKNSGVDARTTSVGENVQLRLQLGWTTTKEEEQ--DEAALAAAKVKA 123

Query: 474 SSNVIFKCRTCQGDHLTLYCPFKH----TQIXXXXXXXXXXXXXXXXXXSNKYIPP---S 632
             + + +CR C+G+H T  CP+K                            +YI P   +
Sbjct: 124 KGSSVVRCRACKGNHFTAQCPYKSIIGPVDEPPLDASPVSSRASGALGEKGRYIAPHLRA 183

Query: 633 SAGRIPGRDQPPVRREDVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTG 803
            +GR  G       R+D   +R++NLS+   E ++ DL + FG + ++YLAK+K TG
Sbjct: 184 GSGRESGDSMFKRERDDSATLRVTNLSDDTREEELRDLFRRFGGIQRVYLAKDKETG 240


>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 121

 Score = 30.7 bits (66), Expect = 0.25
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = +3

Query: 666 PVRREDVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGH 806
           P +  +   I ++ +   A E  ++DL   FGPV  L+L  ++ TG+
Sbjct: 3   PAKSVEGYIIIVTGVHPEATEEQVEDLFADFGPVKNLHLNLDRRTGY 49


>SPAC22A12.01c |pso2|snm1, SPAC56F8.17c, snm1|DNA 5' exonuclease
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 560

 Score = 29.5 bits (63), Expect = 0.59
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = +3

Query: 180 PPPSEVVENGLKIVTEYKYDNDNKKVKIVRTYKIEKRVVSKSIAK 314
           PP ++VV+         K   D++ + +V TY I K  V+ +IAK
Sbjct: 337 PPQADVVQACADKAISIKKSTDSRLLVVVSTYSIGKEKVAVAIAK 381


>SPBC29A10.14 |rec8||meiotic cohesin complex subunit
           Rec8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 561

 Score = 29.1 bits (62), Expect = 0.78
 Identities = 28/105 (26%), Positives = 48/105 (45%), Gaps = 9/105 (8%)
 Frame = +3

Query: 186 PSEVVENGLKIVTEYKYDNDNKKVKIVRTYKIEKRVVSKSIAKRKTWSKFGDSAS----- 350
           P E +E   + +++++ +   + + +  T  + +R  S   AK+K  +KF D  S     
Sbjct: 294 PDENIELSTRTLSQWRKNYVERMIALEATKYVRRRGASS--AKKKELNKFFDWESFHPLL 351

Query: 351 ----DKPGPNPATTNVAEDVFMQFITSKEESQRPDDGELDGLKPP 473
               +K  P+  T +  +DV     TS+ E  R   GEL GL  P
Sbjct: 352 KPWIEKLKPSNNTPSEIDDVLRNIDTSEVEVGRDVQGEL-GLNIP 395


>SPAC20G8.08c |fft1||fun thirty related protein
           Fft1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 944

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 20/81 (24%), Positives = 31/81 (38%)
 Frame = +3

Query: 246 NKKVKIVRTYKIEKRVVSKSIAKRKTWSKFGDSASDKPGPNPATTNVAEDVFMQFITSKE 425
           NK  + +    IEK  V K  AKRK + + G     K  P        E+     +  + 
Sbjct: 172 NKSAQKLNNQPIEKSSVDKENAKRKRYVEEGTKQGQKKKPLRVIELSDEETNEDDLLGQS 231

Query: 426 ESQRPDDGELDGLKPPSSNVI 488
            +    D  +D   P +S+ I
Sbjct: 232 PTACTTDANIDNSIPENSDKI 252


>SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 468

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 25/100 (25%), Positives = 43/100 (43%), Gaps = 1/100 (1%)
 Frame = +3

Query: 153 EVEIDQGVLPPPSEVVENGLKIVTEYKYDNDNKKVKIVRTYKIEKRVVSKSI-AKRKTWS 329
           EVE+D+ V    + V    LKIV E KY  +  +    R   +E   +  SI   R   +
Sbjct: 106 EVELDKHVKQLQAAVDSGTLKIVDEKKYLREISQCNRTRKSFVELNALQTSIDTIRNELN 165

Query: 330 KFGDSASDKPGPNPATTNVAEDVFMQFITSKEESQRPDDG 449
           +  D  +D      + +    D F++  +  +E ++  DG
Sbjct: 166 ELRDQLND------SESKKLSDKFVEIRSELDEVRKQQDG 199


>SPBC16E9.01c |php4|SPBP16F5.09c|CCAAT-binding factor complex
           subunit Php4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 295

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +3

Query: 153 EVEIDQGVLPPPSEVVENGLKIVTEYKY 236
           EVE++  V+ P S   EN  + V +Y Y
Sbjct: 114 EVEVNSEVVKPDSATTENENRYVNQYNY 141


>SPAPJ691.02 |||yippee-like protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 131

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = -2

Query: 255 LSCYHCHIYIP*QFLVHFQPLQKVVEVH 172
           + C  CH YI  +++  ++P QK  + H
Sbjct: 70  IHCCRCHTYIGWKYVSSYEPSQKFKDGH 97


>SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1842

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 18/66 (27%), Positives = 30/66 (45%)
 Frame = +3

Query: 186 PSEVVENGLKIVTEYKYDNDNKKVKIVRTYKIEKRVVSKSIAKRKTWSKFGDSASDKPGP 365
           PS  +    K   + KY+N +  + I R       V+  S   R+ +  F D  +D+P  
Sbjct: 50  PSPTLAGMAKRTLKLKYENMDAALSINR------EVLCYSKDAREIYYNFEDEVADEPAE 103

Query: 366 NPATTN 383
            PA+T+
Sbjct: 104 APASTS 109


>SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 261

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +3

Query: 699 ISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTG 803
           +S LS    E+DI+     +GP+ ++ + + K TG
Sbjct: 104 LSRLSYDTKESDIEREFTRYGPIERIRVVRNKVTG 138


>SPCC553.10 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 349

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = -1

Query: 202 STTSEGGGSTPWSISTSSAQEA*NSSATGMS 110
           STTS    +TP + S+SS+  + +SS++  S
Sbjct: 131 STTSSSSSATPSTTSSSSSSSSSSSSSSSKS 161


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,089,153
Number of Sequences: 5004
Number of extensions: 57903
Number of successful extensions: 162
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 392429240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)