Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc2c04
         (716 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39358| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.6  
SB_458| Best HMM Match : DUF19 (HMM E-Value=1.5)                       30   2.2  
SB_29194| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  
SB_17728| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.0032)         29   3.8  

>SB_39358| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 147

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
 Frame = +2

Query: 485 KCIKMKRVKCNKVR-TVTEIVNSDEKIQKTYELAEFDLKNLSSLESYETLKIKLALSKYM 661
           K  + KR    K++ T  E+V   +K +K + L + +LK L   E Y+ LK K  L KY+
Sbjct: 68  KSAEAKRESKKKIKETERELV---QKGKKPFYLRKSELKKLELAEKYKELKSKGKLQKYL 124


>SB_458| Best HMM Match : DUF19 (HMM E-Value=1.5)
          Length = 518

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 15/32 (46%), Positives = 21/32 (65%)
 Frame = +2

Query: 56  YLLIRGDYESSSELKSLRDLNPWVQNTLLKLL 151
           Y L+RG  +SS E+KS+R  +PW    LL L+
Sbjct: 68  YYLVRGFLKSSEEMKSIRH-SPWSVVALLTLV 98


>SB_29194| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2916

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 21/83 (25%), Positives = 39/83 (46%)
 Frame = +2

Query: 467  KANVVDKCIKMKRVKCNKVRTVTEIVNSDEKIQKTYELAEFDLKNLSSLESYETLKIKLA 646
            +A + +KC ++  V+  K   V+ I   DEK+ +  +  E  L +L+S    +   +++ 
Sbjct: 979  QAQLEEKCTELGNVESEKQYLVSMINERDEKLYEIQDSFEAQLLDLTSSRDND---VEIL 1035

Query: 647  LSKYMAMLSTLEMTQPLLEIFRN 715
             S+  +M   L   Q   E  RN
Sbjct: 1036 RSEQESMHQVLTERQQECETLRN 1058


>SB_17728| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.0032)
          Length = 1293

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 21/83 (25%), Positives = 39/83 (46%)
 Frame = +2

Query: 467  KANVVDKCIKMKRVKCNKVRTVTEIVNSDEKIQKTYELAEFDLKNLSSLESYETLKIKLA 646
            +A + +KC ++  V+  K   V+ I   DEK+ +  +  E  L +L+S    +   +++ 
Sbjct: 927  QAQLEEKCTELGNVESEKQYLVSMINERDEKLYEIQDSFEAQLLDLTSSRDND---VEIL 983

Query: 647  LSKYMAMLSTLEMTQPLLEIFRN 715
             S+  +M   L   Q   E  RN
Sbjct: 984  RSEQESMHQVLTERQQECETLRN 1006


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,470,837
Number of Sequences: 59808
Number of extensions: 324305
Number of successful extensions: 624
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 603
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 623
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1901817086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)