Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc2c01
         (596 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_294| Best HMM Match : Ribosomal_L14 (HMM E-Value=4.1e-23)          181   5e-46
SB_52932| Best HMM Match : Ank (HMM E-Value=0)                         30   1.6  
SB_10243| Best HMM Match : Ank (HMM E-Value=0)                         30   1.6  
SB_5192| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.8  
SB_37730| Best HMM Match : DUF1151 (HMM E-Value=2.9)                   28   5.0  
SB_2012| Best HMM Match : Extensin_2 (HMM E-Value=0.1)                 28   5.0  
SB_39762| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.6  
SB_46476| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.6  
SB_25243| Best HMM Match : Protamine_P1 (HMM E-Value=5.7)              27   8.7  
SB_20073| Best HMM Match : F5_F8_type_C (HMM E-Value=2.9e-18)          27   8.7  

>SB_294| Best HMM Match : Ribosomal_L14 (HMM E-Value=4.1e-23)
          Length = 145

 Score =  181 bits (440), Expect = 5e-46
 Identities = 84/106 (79%), Positives = 96/106 (90%)
 Frame = +2

Query: 41  RGRGGSAGAKFRISLGLPVGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDMIVA 220
           RGRGG++G KFRI+LGLPVGAVINCADNTG KNLY+IAV+GIKGRLNRLPAA SGDM++A
Sbjct: 23  RGRGGTSGGKFRIALGLPVGAVINCADNTGGKNLYIIAVKGIKGRLNRLPAAASGDMVLA 82

Query: 221 TVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNK 358
           TVKKGKPELRKKVMPAVVIRQRK +RR++GVF+YFE N  V V  +
Sbjct: 83  TVKKGKPELRKKVMPAVVIRQRKAYRRKNGVFLYFEANIKVRVRKQ 128


>SB_52932| Best HMM Match : Ank (HMM E-Value=0)
          Length = 1266

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +2

Query: 89   LPVGAVINCADNTGAKNLYVIAVQGIKGRLN 181
            L +GA ++CADN G   L  +A QG    +N
Sbjct: 913  LKLGATVDCADNEGRTPLQAVAWQGCYNLVN 943


>SB_10243| Best HMM Match : Ank (HMM E-Value=0)
          Length = 475

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +2

Query: 89  LPVGAVINCADNTGAKNLYVIAVQGIKGRLN 181
           L +GA ++CADN G   L  +A QG    +N
Sbjct: 109 LKLGATVDCADNEGRTPLQAVAWQGCYNLVN 139


>SB_5192| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4865

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 19/45 (42%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = -2

Query: 373  ALHFALVIDYDTRIVLKVYKYSITPSERFPLPDDHCRHYL-FPEF 242
            A  FA+   Y  R  L  Y+Y  TPS+ F    D CR  L FP F
Sbjct: 3671 ASRFAMSQAY-VRYFLYTYRYCATPSDLFNFIRDKCRASLRFPLF 3714


>SB_37730| Best HMM Match : DUF1151 (HMM E-Value=2.9)
          Length = 303

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 17/54 (31%), Positives = 23/54 (42%)
 Frame = -2

Query: 535 RKLSFFGFDFDVLGKESKTQLLILNVYSSYRARV*GNTRPQISTFFGYRPCDGR 374
           RKLS+FG  FD+  K        +    + R  V   TRP+    F +    GR
Sbjct: 109 RKLSYFGTPFDLRTKSDFRSFFRIEQSPTARRNVFETTRPESDAKFFHTSKSGR 162


>SB_2012| Best HMM Match : Extensin_2 (HMM E-Value=0.1)
          Length = 305

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 17/48 (35%), Positives = 22/48 (45%)
 Frame = -3

Query: 186 SLFRRPLIPWTAITYRFFAPVLSAQLITAPTGRPREIRNFAPAEPPRP 43
           SLF++     T  T    AP L    + APT  P   ++ AP  PP P
Sbjct: 67  SLFKKKKQAPTPQTQASTAPPLVPAGVEAPTPTPMVAQSVAPTPPPPP 114


>SB_39762| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 105

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 18/42 (42%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = -2

Query: 364 FALVIDYDTRIVLKVYKYSITPSERFPLPDDHCRHYL-FPEF 242
           FA+   Y  R  L  Y+Y  TPS+ F    D CR  L FP F
Sbjct: 2   FAMSQAY-VRYFLYTYRYCATPSDLFNFIRDKCRASLRFPLF 42


>SB_46476| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 381

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = -2

Query: 172 TFDTLDSDHIQILCPCVVGAVDYCSHWETQGDT 74
           T   + + +I   CP VVG V+ CS W     T
Sbjct: 330 TVKDVATKYIYDRCPAVVGVVEACSSWAVLAKT 362


>SB_25243| Best HMM Match : Protamine_P1 (HMM E-Value=5.7)
          Length = 201

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +3

Query: 414 CGRVLPQTRAL*LEYTFKISSC 479
           CGR +P  RA+  +Y  K S C
Sbjct: 139 CGRAIPTLRAMRAQYELKASEC 160


>SB_20073| Best HMM Match : F5_F8_type_C (HMM E-Value=2.9e-18)
          Length = 593

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = -3

Query: 396 ATGPVMAEPFISPLLLTMTPALSSKYINTPSRLLNGFRCLMTTAGIT 256
           AT  V A    + L  T+ PAL++K+IN  +R  N  + L+    +T
Sbjct: 186 ATSMVTAPTSKTSLTTTLRPALTAKHINITNRTANVVKKLIKIGLLT 232


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,433,620
Number of Sequences: 59808
Number of extensions: 427514
Number of successful extensions: 1100
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1036
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1096
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)