Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc2b24
         (766 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59184| Best HMM Match : Glyco_transf_17 (HMM E-Value=1.6e-11)       30   2.3  
SB_37794| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  

>SB_59184| Best HMM Match : Glyco_transf_17 (HMM E-Value=1.6e-11)
          Length = 268

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = -2

Query: 531 DEVSSRHGSTSPHHRHVLDHGSPYSMNHKC 442
           D V   H  TS HH   LDHG+ Y    +C
Sbjct: 18  DPVPMSHHVTSNHHYTCLDHGTRYKTFEQC 47


>SB_37794| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 750

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +3

Query: 456 WNKVTRDLERGDDEAKYYHDVMTPRHL 536
           W++ +R  ERG  +AK Y ++ TPR +
Sbjct: 633 WSRESRQTERGIHQAKAYIEMKTPRQI 659


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,158,997
Number of Sequences: 59808
Number of extensions: 313259
Number of successful extensions: 812
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 756
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 812
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2072022557
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)