Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc2b24
         (766 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY705402-1|AAU12511.1|  509|Anopheles gambiae nicotinic acetylch...    27   0.84 
AY753542-1|AAV28545.1| 3361|Anopheles gambiae SGS5 protein.            24   4.5  
AJ439398-8|CAD28131.1| 1283|Anopheles gambiae putative different...    23   7.8  

>AY705402-1|AAU12511.1|  509|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 7 protein.
          Length = 509

 Score = 26.6 bits (56), Expect = 0.84
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = -2

Query: 537 QGDEVSSRHGSTSPHHRHVLDHGSPYSMNHKCN**DHHAEY 415
           Q  EV  R  S+     +VLD    +  NH+CN   H+  Y
Sbjct: 350 QLQEVEMRERSSKSLLANVLDIDDDFRCNHRCNTLPHNPTY 390


>AY753542-1|AAV28545.1| 3361|Anopheles gambiae SGS5 protein.
          Length = 3361

 Score = 24.2 bits (50), Expect = 4.5
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = +3

Query: 417  TQHDDLINYIYDSWNKVTRDLERGD 491
            T  + L+NY+   W + ++ L+ GD
Sbjct: 1384 TPQEPLMNYVISCWVRTSKALKLGD 1408


>AJ439398-8|CAD28131.1| 1283|Anopheles gambiae putative
           differentiation regulator protein.
          Length = 1283

 Score = 23.4 bits (48), Expect = 7.8
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -2

Query: 507 STSPHHRHVLDHGSPYSM 454
           S SPHH     HG+P ++
Sbjct: 716 SPSPHHHLTSPHGAPLAL 733


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 604,741
Number of Sequences: 2352
Number of extensions: 10599
Number of successful extensions: 20
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 79418373
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)