Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc2b24
         (766 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY122195-1|AAM52707.1|  147|Drosophila melanogaster LD45253p pro...    40   0.004
AE014298-1319|AAF46478.1|  372|Drosophila melanogaster CG17438-P...    30   3.0  
AE014134-2919|AAF53661.1|  446|Drosophila melanogaster CG15157-P...    29   7.0  

>AY122195-1|AAM52707.1|  147|Drosophila melanogaster LD45253p
           protein.
          Length = 147

 Score = 39.9 bits (89), Expect = 0.004
 Identities = 21/55 (38%), Positives = 34/55 (61%)
 Frame = +3

Query: 417 TQHDDLINYIYDSWNKVTRDLERGDDEAKYYHDVMTPRHLANFRPFNLDEWWARQ 581
           +QHD+LI YI  +W KV    E+G     Y ++  +   L NF+PF+L+E+W ++
Sbjct: 83  SQHDELIRYIRGAWIKV---YEQGPP-VLYCNE--SDNQLKNFKPFDLEEYWGQR 131


>AE014298-1319|AAF46478.1|  372|Drosophila melanogaster CG17438-PA
           protein.
          Length = 372

 Score = 30.3 bits (65), Expect = 3.0
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -2

Query: 759 KFSKNDKSXIPKNQCKKTC*HRHATTDFV 673
           K  +ND+  IP N C K C HRH    ++
Sbjct: 319 KLEQNDQEEIP-NDCHKACRHRHHKPSYI 346


>AE014134-2919|AAF53661.1|  446|Drosophila melanogaster CG15157-PA
           protein.
          Length = 446

 Score = 29.1 bits (62), Expect = 7.0
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -2

Query: 534 GDEVSSRHGSTSPHHRHVLDHGSPYSMNH 448
           G  +  R   TS HH H L H  P++ +H
Sbjct: 351 GHGLKERESQTSLHHPHTLPHPHPHTHSH 379


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,099,053
Number of Sequences: 53049
Number of extensions: 455708
Number of successful extensions: 1313
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1274
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1312
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3520086471
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)