Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc2b24
         (766 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132847-4|CAB63373.3|  965|Caenorhabditis elegans Hypothetical ...    29   4.8  
U39644-7|AAO44908.1|  307|Caenorhabditis elegans Collagen protei...    28   6.3  

>AL132847-4|CAB63373.3|  965|Caenorhabditis elegans Hypothetical
           protein Y48G10A.4 protein.
          Length = 965

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 13/33 (39%), Positives = 23/33 (69%), Gaps = 2/33 (6%)
 Frame = -3

Query: 737 PEYLKINVKKHANIDTPQL--ILCCHINKISKV 645
           PE+L   ++KH+N+ T  L  +L C I+++SK+
Sbjct: 509 PEHLMEKLEKHSNLPTYNLHRLLLCKIDQLSKM 541


>U39644-7|AAO44908.1|  307|Caenorhabditis elegans Collagen protein
           171 protein.
          Length = 307

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -2

Query: 651 KSTEYENASVVY*TKTDACCDCGSDA 574
           + TEYEN  V   +    CC CG+ A
Sbjct: 94  RQTEYENLGVEGSSSQGGCCGCGTSA 119


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,375,454
Number of Sequences: 27780
Number of extensions: 230113
Number of successful extensions: 555
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 536
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 552
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1830096852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)