Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc2b20
         (755 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q0VJV2 Cluster: Like moricin; n=3; Manduca sexta|Rep: L...    42   0.022
UniRef50_Q6UV17 Cluster: Endonuclease and reverse transcriptase-...    40   0.050
UniRef50_A0BY80 Cluster: Chromosome undetermined scaffold_136, w...    35   1.9  
UniRef50_A5JZK3 Cluster: 3',5'-cyclic-nucleotide phosphodiestera...    33   5.8  

>UniRef50_Q0VJV2 Cluster: Like moricin; n=3; Manduca sexta|Rep: Like
           moricin - Manduca sexta (Tobacco hawkmoth) (Tobacco
           hornworm)
          Length = 248

 Score = 41.5 bits (93), Expect = 0.022
 Identities = 18/23 (78%), Positives = 18/23 (78%)
 Frame = -3

Query: 657 MGDGKHSPSGGPYARLPTRAIKK 589
           MGDG HSPSG PYA LPTRA  K
Sbjct: 1   MGDGNHSPSGRPYASLPTRAKMK 23


>UniRef50_Q6UV17 Cluster: Endonuclease and reverse transcriptase-like
            protein; n=25; Arthropoda|Rep: Endonuclease and reverse
            transcriptase-like protein - Bombyx mori (Silk moth)
          Length = 986

 Score = 40.3 bits (90), Expect = 0.050
 Identities = 17/18 (94%), Positives = 18/18 (100%)
 Frame = -2

Query: 700  GKQRLGSAPGIAEVHGRR 647
            G+QRLGSAPGIAEVHGRR
Sbjct: 969  GRQRLGSAPGIAEVHGRR 986


>UniRef50_A0BY80 Cluster: Chromosome undetermined scaffold_136,
           whole genome shotgun sequence; n=2; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_136,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 276

 Score = 35.1 bits (77), Expect = 1.9
 Identities = 24/85 (28%), Positives = 35/85 (41%), Gaps = 2/85 (2%)
 Frame = -3

Query: 261 SYIPGRGHKTRYHQ*TRLDIITLKPKAKLN-DPDFHLFLLYYTARH-SPTLSYLNNNLDS 88
           S I  R H   ++   +  I    P+A LN  P      +YY + H  P   Y N NL+ 
Sbjct: 71  SIIQNRNHSRSFNHNQQFRISLNYPQANLNLSPSIKNKGMYYYSIHLQPHTQYYNLNLNI 130

Query: 87  FIEFIKRNFLETNNLYKICSSNGGK 13
             E ++ N    N  +K C+    K
Sbjct: 131 IFEILQPNLFYLNQEHKPCNCRKSK 155


>UniRef50_A5JZK3 Cluster: 3',5'-cyclic-nucleotide phosphodiesterase,
           putative; n=7; Plasmodium|Rep: 3',5'-cyclic-nucleotide
           phosphodiesterase, putative - Plasmodium vivax
          Length = 783

 Score = 33.5 bits (73), Expect = 5.8
 Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
 Frame = +2

Query: 317 YVQGYVLQK*KIIIEYAVKSLVIFV-FNFVFTGDTRDHGHHDVKAINLSYGVYL*QWINK 493
           YV+ +   + KI I Y +  L+++  + F+   D +DH    V   N  Y  Y    IN 
Sbjct: 118 YVERFKTIRAKIFISYTISVLILWCSWLFILFNDVKDHLPTVVNVNNFLYATYTHNKINM 177

Query: 494 HMCKY 508
            +C Y
Sbjct: 178 VLCFY 182


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 747,180,477
Number of Sequences: 1657284
Number of extensions: 14801266
Number of successful extensions: 34874
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 33642
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34869
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 62558016040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)