Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc2b20
         (755 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16H5.07c |ppa2||serine/threonine protein phosphatase Ppa2|Sc...    27   2.9  
SPAC823.15 |ppa1||minor serine/threonine protein phosphatase Ppa...    27   2.9  
SPBC1685.06 |cid11||poly|Schizosaccharomyces pombe|chr 2|||Manual      26   6.7  
SPBC12C2.05c |||diacylglycerol binding protein Bzz1 |Schizosacch...    26   6.7  
SPCC584.16c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    26   6.7  
SPBC6B1.04 |mde4||monopolin-like complex subunit Mde4|Schizosacc...    26   6.7  
SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex sub...    26   6.7  
SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase ki...    26   6.7  

>SPBC16H5.07c |ppa2||serine/threonine protein phosphatase
           Ppa2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 322

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +2

Query: 395 NFVFTGDTRDHGHHDVKAINL 457
           N++F GD  D G+H V+ ++L
Sbjct: 92  NYLFMGDYVDRGYHSVETVSL 112


>SPAC823.15 |ppa1||minor serine/threonine protein phosphatase
           Ppa1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 309

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +2

Query: 395 NFVFTGDTRDHGHHDVKAINL 457
           N++F GD  D G+H V+ ++L
Sbjct: 79  NYLFMGDYVDRGYHSVETVSL 99


>SPBC1685.06 |cid11||poly|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 478

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -3

Query: 750 TYTNKPNTNKIFRNSISVSSGLAPP 676
           +Y NK N +  F+   S++ G APP
Sbjct: 429 SYENKANRDSDFQGQTSLTQGSAPP 453


>SPBC12C2.05c |||diacylglycerol binding protein Bzz1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = +2

Query: 38  LYKLFVSKKLRLINSIKLSKLLF 106
           LYK F S+K  L+NS+K +K+ +
Sbjct: 136 LYKKFSSEKETLLNSVKRAKVSY 158


>SPCC584.16c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 231

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 13/47 (27%), Positives = 24/47 (51%)
 Frame = -3

Query: 168 PDFHLFLLYYTARHSPTLSYLNNNLDSFIEFIKRNFLETNNLYKICS 28
           P+   FLL +   H+P L +L   L+S +  +KR  +    ++ + S
Sbjct: 28  PELPSFLLAFP--HAPPLGFLRPKLNSLVVQVKRQGITAEPVFNLYS 72


>SPBC6B1.04 |mde4||monopolin-like complex subunit
           Mde4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 421

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -1

Query: 377 VILQRIQLLFFIFEARNLVHKLMSELTSQLF 285
           V  +R Q+LF++ +A NL H L S+   + F
Sbjct: 19  VTSRRNQILFYLSKALNLAHLLRSDSLQKSF 49


>SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex
           subunit Rlf2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 544

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 15/56 (26%), Positives = 26/56 (46%)
 Frame = -2

Query: 682 SAPGIAEVHGRR*TLTIRWAVCSSAYKGNKKKSRLFILKPHSGARLKIYSVRFLED 515
           S+P  + +H           VC  +Y+GN+KK R++     +G   K+   R  E+
Sbjct: 34  SSPNESVIHSSHSASEADEYVCKLSYEGNRKK-RIYNGSAEAGKEKKLQKQRAQEE 88


>SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase kinase
            Win1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1436

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = -3

Query: 165  DFHLFLLYYTARHSPTLSYLNNNLDSFIE-FIKRNFLETNN 46
            D H  L+Y+ A H+P +   ++ L    + F+KR F+   N
Sbjct: 1352 DNHFSLMYHIAAHNPPIIPADDQLSPLGQNFLKRCFVSDPN 1392


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,151,197
Number of Sequences: 5004
Number of extensions: 64735
Number of successful extensions: 167
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)