Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc2b20
         (755 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0054 - 10296278-10296727                                         30   1.7  
08_01_0861 + 8431027-8431252,8431412-8431497                           29   3.0  
04_01_0261 + 3516461-3516629,3517729-3517823,3518724-3518834,351...    28   7.0  
01_01_0517 + 3803740-3806106,3806226-3806312,3806397-3807035,380...    28   9.2  

>04_03_0054 - 10296278-10296727
          Length = 149

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 17/63 (26%), Positives = 30/63 (47%)
 Frame = -3

Query: 213 RLDIITLKPKAKLNDPDFHLFLLYYTARHSPTLSYLNNNLDSFIEFIKRNFLETNNLYKI 34
           + DI+ L+ +    DP  H      T +H   +   N+ +D  ++ +   F ET++   I
Sbjct: 32  KYDIVKLEMEDTYIDPKKHRHKSGITNKHYYQVDCFNDVIDWILQELDNRFSETSSQLLI 91

Query: 33  CSS 25
           CSS
Sbjct: 92  CSS 94


>08_01_0861 + 8431027-8431252,8431412-8431497
          Length = 103

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +2

Query: 593 FIALVGRRAYGPPDGECLPSPMDFSNARGGAK 688
           F+A     A  PP  +CL +P D + A GG +
Sbjct: 12  FLAAAAVGAAAPPHSQCLDNPPDLTTAGGGGE 43


>04_01_0261 +
           3516461-3516629,3517729-3517823,3518724-3518834,
           3519179-3519213,3519864-3519954,3520124-3520196,
           3521127-3521257,3524325-3524720
          Length = 366

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 19/59 (32%), Positives = 27/59 (45%)
 Frame = -2

Query: 280 AIMPFVILHSRTRSQDAVPPVNTSRYNNPEAKSKAQ*PRFSFVFIVLHCAPFTHFVVFK 104
           A M  +  +      D+VPPVN S   N E   KA      F F+ + C P   +++FK
Sbjct: 60  ATMNTMARYGNKYGNDSVPPVNPSANPNLEL-CKA------FPFLSVSCLPLYQYIIFK 111


>01_01_0517 + 3803740-3806106,3806226-3806312,3806397-3807035,
            3807118-3807282,3807363-3807657,3807739-3807953,
            3808125-3808430,3808539-3808602,3808735-3808974,
            3809150-3809253
          Length = 1493

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +1

Query: 163  IGVIELCFWLQGYYIET 213
            I V+  CFW Q YYI+T
Sbjct: 1076 IPVLAACFWYQRYYIDT 1092


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,734,214
Number of Sequences: 37544
Number of extensions: 390572
Number of successful extensions: 887
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 867
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 886
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2016060588
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)