Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc2b20
         (755 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88184-7|AAK31516.1|  576|Caenorhabditis elegans Hypothetical pr...    32   0.51 
Z70308-9|CAA94346.2|  402|Caenorhabditis elegans Hypothetical pr...    30   1.5  
Z92811-3|CAB07274.1| 1083|Caenorhabditis elegans Hypothetical pr...    29   3.6  
Z92789-9|CAB07223.1| 1083|Caenorhabditis elegans Hypothetical pr...    29   3.6  
AL132904-24|CAC35834.2|  459|Caenorhabditis elegans Hypothetical...    29   4.7  
Z71264-2|CAA95830.1| 1202|Caenorhabditis elegans Hypothetical pr...    28   6.2  
U53147-3|AAM29659.1|  550|Caenorhabditis elegans Hypothetical pr...    28   6.2  
U53147-2|AAA96114.2|  935|Caenorhabditis elegans Hypothetical pr...    28   6.2  
AL032631-11|CAB63341.1|  975|Caenorhabditis elegans Hypothetical...    28   6.2  
Z82094-3|CAB05024.1| 2561|Caenorhabditis elegans Hypothetical pr...    28   8.2  
Z81120-8|CAB03348.1| 2561|Caenorhabditis elegans Hypothetical pr...    28   8.2  
U80444-1|AAB37787.2|  383|Caenorhabditis elegans Hypothetical pr...    28   8.2  
AF040654-7|AAK21450.2|  362|Caenorhabditis elegans Hypothetical ...    28   8.2  

>U88184-7|AAK31516.1|  576|Caenorhabditis elegans Hypothetical
           protein F36H5.5 protein.
          Length = 576

 Score = 31.9 bits (69), Expect = 0.51
 Identities = 16/37 (43%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
 Frame = -3

Query: 210 LDIITLKPKAK-LNDPDFHLFLLYYTARHSPTLSYLN 103
           L+ ++LK ++K L + D +LFL Y+ A   P L YLN
Sbjct: 229 LNCVSLKIRSKQLTEKDLNLFLKYWIAGLKPELEYLN 265


>Z70308-9|CAA94346.2|  402|Caenorhabditis elegans Hypothetical
           protein F49E11.7 protein.
          Length = 402

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +2

Query: 398 FVFTGDTRDHGHHDVKAINLSYGV 469
           FVF GD  D GHH ++ I+L + +
Sbjct: 117 FVFLGDYVDRGHHSIECISLVFAL 140


>Z92811-3|CAB07274.1| 1083|Caenorhabditis elegans Hypothetical
           protein T01G1.3 protein.
          Length = 1083

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +2

Query: 608 GRRAYGPPDGECLPSPMDFSNAR 676
           G   Y P   +C P PMD+SN R
Sbjct: 810 GFNPYNPSHSQCPPPPMDYSNNR 832


>Z92789-9|CAB07223.1| 1083|Caenorhabditis elegans Hypothetical
           protein T01G1.3 protein.
          Length = 1083

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +2

Query: 608 GRRAYGPPDGECLPSPMDFSNAR 676
           G   Y P   +C P PMD+SN R
Sbjct: 810 GFNPYNPSHSQCPPPPMDYSNNR 832


>AL132904-24|CAC35834.2|  459|Caenorhabditis elegans Hypothetical
           protein Y111B2A.4 protein.
          Length = 459

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = -3

Query: 141 YTARHSPTLSYLNNNLDSFIEFIKRNFLETNNLYKICSSNGGKNA 7
           +  +H+ T +  NN+L+  I+ +K N +E    Y+IC     + A
Sbjct: 316 FKEQHTATQN-ANNDLNRRIDSLKANLIEYEERYEICKKESAETA 359


>Z71264-2|CAA95830.1| 1202|Caenorhabditis elegans Hypothetical
           protein K07G5.3 protein.
          Length = 1202

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 20/43 (46%), Positives = 24/43 (55%)
 Frame = -3

Query: 741 NKPNTNKIFRNSISVSSGLAPPLALLKSMGDGKHSPSGGPYAR 613
           NKP   K+F  S SV  GLAP        GDG+ SPS GP+ +
Sbjct: 26  NKPE--KLFLRSASV--GLAP--------GDGEQSPSPGPFTK 56


>U53147-3|AAM29659.1|  550|Caenorhabditis elegans Hypothetical
           protein C01B7.1b protein.
          Length = 550

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 17/39 (43%), Positives = 23/39 (58%)
 Frame = -3

Query: 120 TLSYLNNNLDSFIEFIKRNFLETNNLYKICSSNGGKNAM 4
           +LS   + LD F E  +RNFLE+ N     +SNG KN +
Sbjct: 15  SLSNSPDQLDVFEES-RRNFLESINATVSMTSNGSKNGI 52


>U53147-2|AAA96114.2|  935|Caenorhabditis elegans Hypothetical
           protein C01B7.1a protein.
          Length = 935

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 17/39 (43%), Positives = 23/39 (58%)
 Frame = -3

Query: 120 TLSYLNNNLDSFIEFIKRNFLETNNLYKICSSNGGKNAM 4
           +LS   + LD F E  +RNFLE+ N     +SNG KN +
Sbjct: 15  SLSNSPDQLDVFEES-RRNFLESINATVSMTSNGSKNGI 52


>AL032631-11|CAB63341.1|  975|Caenorhabditis elegans Hypothetical
           protein Y106G6H.12 protein.
          Length = 975

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = -3

Query: 108 LNNNLDSFIEFIKRNFLETNNLYKICSSNGGKNAMT 1
           ++NN    IE ++ NF  T    KICSS   +NA++
Sbjct: 451 ISNNDYGIIELLESNFKTTLETNKICSSCSCENAVS 486


>Z82094-3|CAB05024.1| 2561|Caenorhabditis elegans Hypothetical
           protein T12D8.1 protein.
          Length = 2561

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +3

Query: 210 DVFTGGTASCDLVRECKMTKGIMACKKL 293
           DV   GT S D+ R+C M+    +C+++
Sbjct: 64  DVNRSGTMSLDMARQCDMSSSCGSCQRM 91


>Z81120-8|CAB03348.1| 2561|Caenorhabditis elegans Hypothetical
           protein T12D8.1 protein.
          Length = 2561

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +3

Query: 210 DVFTGGTASCDLVRECKMTKGIMACKKL 293
           DV   GT S D+ R+C M+    +C+++
Sbjct: 64  DVNRSGTMSLDMARQCDMSSSCGSCQRM 91


>U80444-1|AAB37787.2|  383|Caenorhabditis elegans Hypothetical
           protein F26B1.5 protein.
          Length = 383

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 12/39 (30%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +2

Query: 353 IIEYAVKSLVIFVFNFVF-TGDTRDHGHHDVKAINLSYG 466
           +++    SL++ +F   + T      G+H+ KAIN +YG
Sbjct: 124 VLDLKFVSLLVIMFQIAYPTNFVLLRGNHETKAINFAYG 162


>AF040654-7|AAK21450.2|  362|Caenorhabditis elegans Hypothetical
           protein R06B10.3 protein.
          Length = 362

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 16/58 (27%), Positives = 25/58 (43%)
 Frame = -3

Query: 744 TNKPNTNKIFRNSISVSSGLAPPLALLKSMGDGKHSPSGGPYARLPTRAIKKNQDYLF 571
           TN PNT K  +  +     +   +A  +S+GD    P+   +       I+   DYLF
Sbjct: 156 TNPPNTPKTTQKPVRNQENMIKFMADAESVGDPNVDPNALSFYNKEREFIRAVTDYLF 213


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,382,406
Number of Sequences: 27780
Number of extensions: 362065
Number of successful extensions: 957
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 932
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 957
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1798543458
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)