Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc2b20
         (755 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    24   1.8  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    23   4.1  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    22   7.1  

>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +3

Query: 102 YLNTTKWVNGAQCNTIKTNENRGH 173
           Y+ TT  +  A CN IK + N+G+
Sbjct: 142 YVTTTSGMFEALCNHIKYSTNKGN 165


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = -3

Query: 147 LYYTARHSPTLSYLNNNLDSFIEFIKRNFLETNNLY 40
           LYY+A  S  L+Y+N       +F+K  + + NN++
Sbjct: 263 LYYSALSSHNLNYVNTE-----QFVKSQY-QANNVH 292


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
 Frame = +1

Query: 643 FTVAHGLQQCQGR-SQAAAYRNRISKYFISIWFISIC 750
           FTV   +  C    S   +  +R  K+ I IW +++C
Sbjct: 148 FTVERYIAICHPFISHTMSKLSRAVKFIIVIWLLALC 184


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 211,565
Number of Sequences: 438
Number of extensions: 4339
Number of successful extensions: 14
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23753925
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)