Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc2b14
         (731 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0Y2G8 Cluster: Putative uncharacterized protein; n=2; ...    29   0.21 
UniRef50_A6PKX6 Cluster: Putative uncharacterized protein; n=1; ...    35   2.4  
UniRef50_A0QQ94 Cluster: Putative uncharacterized protein; n=1; ...    34   4.1  
UniRef50_A0AXW0 Cluster: Putative uncharacterized protein; n=2; ...    34   4.1  
UniRef50_Q3SJ78 Cluster: Putative uncharacterized protein precur...    33   9.5  

>UniRef50_A0Y2G8 Cluster: Putative uncharacterized protein; n=2;
           Alteromonadales|Rep: Putative uncharacterized protein -
           Alteromonadales bacterium TW-7
          Length = 190

 Score = 29.5 bits (63), Expect(2) = 0.21
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +1

Query: 337 DRAVCRKSKTPTPRDVSWHSSVEP 408
           DR +  +++T TP   SW  SVEP
Sbjct: 74  DRVLAERTRTVTPMPASWTGSVEP 97



 Score = 27.9 bits (59), Expect(2) = 0.21
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +1

Query: 391 HSSVEPFFGT*LYS*DREINDHFICTVYSHSCTERHA 501
           H  V+  F + LY   R IND F   VY++ C ++ A
Sbjct: 134 HFRVDSNFTSALYQVGRAINDDFEHEVYTYFCNKQRA 170


>UniRef50_A6PKX6 Cluster: Putative uncharacterized protein; n=1;
           Victivallis vadensis ATCC BAA-548|Rep: Putative
           uncharacterized protein - Victivallis vadensis ATCC
           BAA-548
          Length = 1042

 Score = 34.7 bits (76), Expect = 2.4
 Identities = 15/27 (55%), Positives = 21/27 (77%)
 Frame = +3

Query: 642 DYWSIAGAI*TLTMEAPSV*FVHRRRA 722
           D+WS AGA+ TL +EAPS+   +R+RA
Sbjct: 594 DFWSYAGALETLAVEAPSLADANRKRA 620


>UniRef50_A0QQ94 Cluster: Putative uncharacterized protein; n=1;
           Mycobacterium smegmatis str. MC2 155|Rep: Putative
           uncharacterized protein - Mycobacterium smegmatis
           (strain ATCC 700084 / mc(2)155)
          Length = 180

 Score = 33.9 bits (74), Expect = 4.1
 Identities = 24/60 (40%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
 Frame = +1

Query: 445 INDHFICTVYSHSCTERHAQLFLSPAATAT---VEGGDACAPEYSGTASCKSAGVCSSAG 615
           I D F C V +         L LSP A+A    V GGDAC  E +GT    +AG  + AG
Sbjct: 3   IFDRFNCGVVAAGAALCGVALVLSPVASAVTPLVTGGDACLYEQAGTVG--AAGAPAGAG 60


>UniRef50_A0AXW0 Cluster: Putative uncharacterized protein; n=2;
           Bacteria|Rep: Putative uncharacterized protein -
           Burkholderia cenocepacia (strain HI2424)
          Length = 1425

 Score = 33.9 bits (74), Expect = 4.1
 Identities = 28/81 (34%), Positives = 37/81 (45%), Gaps = 6/81 (7%)
 Frame = +2

Query: 398 PWNRSLEHNYTREIVRLMTTLSVPSTRTLVPNATRS----YFCLQQQ-RL-PSKGVTHAH 559
           PWNR +E  Y    VRL     +P  +  + N  RS       LQ   RL P +G    H
Sbjct: 719 PWNRLVEIIYHDSSVRLTVARDLPWIKMTLANTERSTADRALVLQAALRLSPDEGQWQHH 778

Query: 560 LSTLEQRHANRRVCVAVLVSR 622
           LS LEQ  A++   + V+  R
Sbjct: 779 LSELEQLVADQTELLDVIAER 799


>UniRef50_Q3SJ78 Cluster: Putative uncharacterized protein
           precursor; n=1; Thiobacillus denitrificans ATCC
           25259|Rep: Putative uncharacterized protein precursor -
           Thiobacillus denitrificans (strain ATCC 25259)
          Length = 114

 Score = 32.7 bits (71), Expect = 9.5
 Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = +1

Query: 520 AATATVEGGDAC-APEYSGTASCKSAGVCSSAGQQMDGVTNRIIGALQV 663
           A T      D C  PE SGT  CKS+ +C + GQ    VT  ++   QV
Sbjct: 40  ALTDAAAAHDCCDEPESSGTP-CKSSHLCQTGGQHFSAVTLDVVPQEQV 87


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 713,154,370
Number of Sequences: 1657284
Number of extensions: 14115709
Number of successful extensions: 34724
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 33163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34718
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 59265488880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)