Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc2b14
         (731 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||...    27   3.6  
SPAC5D6.02c |mug165||sequence orphan|Schizosaccharomyces pombe|c...    26   4.8  
SPBC11B10.04c |mrps28||mitochondrial ribosomal protein subunit S...    25   8.4  

>SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1260

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 12/43 (27%), Positives = 23/43 (53%)
 Frame = +1

Query: 508  FLSPAATATVEGGDACAPEYSGTASCKSAGVCSSAGQQMDGVT 636
            FL+P+ TA V GG+    +       K+  +C+++   M+ +T
Sbjct: 1058 FLNPSETAAVVGGNVLTSQRITDVILKAFSICAASQGCMNNLT 1100


>SPAC5D6.02c |mug165||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 300

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = -1

Query: 638 FVTPSIC*PALLHTPADLHDAVPEYSGAHASP 543
           ++T  +  P+L    +D+   VPEY+ + +SP
Sbjct: 245 YITTDLLSPSLTCFASDILQTVPEYTSSQSSP 276


>SPBC11B10.04c |mrps28||mitochondrial ribosomal protein subunit
           S28|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 288

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +1

Query: 280 AVMTARILDLGVCCINHRRDR 342
           AV T+RIL L   C NH++D+
Sbjct: 220 AVYTSRILALSDHCKNHKKDQ 240


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,950,120
Number of Sequences: 5004
Number of extensions: 59571
Number of successful extensions: 141
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)