Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc2b14
         (731 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0141 + 1631649-1631727,1633607-1633651,1633841-1634454,163...    31   0.94 
11_01_0295 + 2217496-2218092,2218774-2218876,2219140-2219249,221...    30   1.6  
10_08_0631 - 19435796-19436452,19437237-19438130                       30   1.6  
03_05_0499 + 24940443-24940994                                         29   3.8  
06_03_1217 - 28484007-28487237                                         29   5.0  
03_06_0460 - 34098115-34098622,34098981-34099355,34100939-341011...    29   5.0  
02_05_0790 - 31768131-31768269,31768343-31768503,31768845-317689...    28   8.8  

>04_01_0141 +
           1631649-1631727,1633607-1633651,1633841-1634454,
           1634569-1634627,1634721-1634911,1636739-1637073
          Length = 440

 Score = 31.1 bits (67), Expect = 0.94
 Identities = 18/49 (36%), Positives = 27/49 (55%)
 Frame = +1

Query: 523 ATATVEGGDACAPEYSGTASCKSAGVCSSAGQQMDGVTNRIIGALQVLS 669
           AT TV GG  CA   +   +C S G CS+AG Q+  + + +   + +LS
Sbjct: 132 ATGTVRGGAPCA-RVAMYKACWSGGGCSTAG-QLKAMDDAVHDGVDILS 178


>11_01_0295 +
           2217496-2218092,2218774-2218876,2219140-2219249,
           2219328-2219399,2219653-2219814,2220300-2220510,
           2220613-2220948,2221050-2221162
          Length = 567

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = -1

Query: 596 PADLHDAVPEYSGAHASPPSTVAVAAGDKNNCAWRSVQECE 474
           PADL D +    G+H  P ST A   G +   A  + +E E
Sbjct: 121 PADLKDLIAGLYGSHPQPSSTDAAEVGTQEGSAVAAAEEEE 161


>10_08_0631 - 19435796-19436452,19437237-19438130
          Length = 516

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 19/52 (36%), Positives = 28/52 (53%)
 Frame = -3

Query: 708 EQIRQKAPPLSKFR*HLQCSNNPVRHAVHLLTSTATHTRRFA*RCSRVLRCA 553
           ++I+  A PLSK R HL CSN P   +  + T T  + R       +V++CA
Sbjct: 466 DEIQVSASPLSK-RWHLVCSNIPNNISYLVSTFTLANCRTTDIGTKKVMQCA 516


>03_05_0499 + 24940443-24940994
          Length = 183

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 16/34 (47%), Positives = 17/34 (50%), Gaps = 3/34 (8%)
 Frame = +1

Query: 514 SPAATATVEGGDACA---PEYSGTASCKSAGVCS 606
           SPAA A  EG D CA    EYSG    +    CS
Sbjct: 79  SPAAGAAAEGADTCAICCQEYSGADKVRRVVRCS 112


>06_03_1217 - 28484007-28487237
          Length = 1076

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
 Frame = +1

Query: 481 SCTERHAQLFLSPAATATVEGGDACAPEYSGTAS-CKSAGV-CSSAGQQMDGVTNRI 645
           +C E      LS  A A+   GDA   ++ G+   C+  GV C  AG   DG   R+
Sbjct: 29  ACAEAERAALLSFLAEASPPAGDAIVADWRGSPDCCRWDGVGCGGAGDG-DGAVTRL 84


>03_06_0460 -
           34098115-34098622,34098981-34099355,34100939-34101156,
           34101235-34101297
          Length = 387

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 13/57 (22%), Positives = 27/57 (47%)
 Frame = +1

Query: 493 RHAQLFLSPAATATVEGGDACAPEYSGTASCKSAGVCSSAGQQMDGVTNRIIGALQV 663
           + A++F   A+ +    G  C  + +   +  +A  C S  ++M  V   ++GA +V
Sbjct: 257 KSARVFFVTASPSHAGAGGECYDQTTPVGAADAASYCGSTSRRMVQVAGEVLGASRV 313


>02_05_0790 -
           31768131-31768269,31768343-31768503,31768845-31768973,
           31769770-31769912,31770215-31770332,31771070-31771144,
           31771528-31771620,31771750-31771879,31772038-31772126,
           31772411-31772506,31772610-31772900
          Length = 487

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +1

Query: 466 TVYSHSCTERHAQLFLSPAATATVEGGDACAP 561
           T  + S   RH +LF S  +++TVE G+  +P
Sbjct: 28  TFRTSSLPRRHQRLFASAPSSSTVENGEPSSP 59


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,504,948
Number of Sequences: 37544
Number of extensions: 400066
Number of successful extensions: 1173
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1172
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1921741964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)