Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc2b14
         (731 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37133| Best HMM Match : rve (HMM E-Value=0.23)                      31   1.3  
SB_42819| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.9  
SB_34660| Best HMM Match : AdoHcyase_NAD (HMM E-Value=0.63)            28   9.0  

>SB_37133| Best HMM Match : rve (HMM E-Value=0.23)
          Length = 359

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 15/37 (40%), Positives = 23/37 (62%)
 Frame = +2

Query: 515 LQQQRLPSKGVTHAHLSTLEQRHANRRVCVAVLVSRW 625
           ++ Q+   KG+THA+LS LE+    +R  +AV   RW
Sbjct: 106 MRLQKTAYKGLTHANLSKLEE--VGQRAGLAVTAERW 140


>SB_42819| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 252

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = +2

Query: 353 GRARHLRRGMSPGIVPWNRSLEHNYTREIVRLMTTLS-VPSTRTLVPNATR 502
           G++R  R G  P +  W    EH+ T+E   L + LS V +  T+    TR
Sbjct: 55  GKSRSERGGNDPKLKSWQHVQEHSVTKEKETLKSELSQVNAVSTIFDGHTR 105


>SB_34660| Best HMM Match : AdoHcyase_NAD (HMM E-Value=0.63)
          Length = 404

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = +1

Query: 274 IDAVMTA-RILDLGVCCINHRRDRAVC 351
           +DA +T   + + GV C NH +DR  C
Sbjct: 5   VDATVTTDAVFEFGVGCQNHHKDRTSC 31


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,903,095
Number of Sequences: 59808
Number of extensions: 481520
Number of successful extensions: 1218
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1216
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1962001171
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)