Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc2b14
         (731 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z72511-4|CAA96660.1|  395|Caenorhabditis elegans Hypothetical pr...    29   3.4  
AF101316-3|AAC69232.2|  508|Caenorhabditis elegans Hypothetical ...    29   4.5  
U40160-3|AAA81157.2|  363|Caenorhabditis elegans Nuclear hormone...    28   5.9  

>Z72511-4|CAA96660.1|  395|Caenorhabditis elegans Hypothetical
           protein F55A11.7 protein.
          Length = 395

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 17/41 (41%), Positives = 21/41 (51%)
 Frame = +2

Query: 395 VPWNRSLEHNYTREIVRLMTTLSVPSTRTLVPNATRSYFCL 517
           VP    +     R+   L T L VPST +L+P A  S FCL
Sbjct: 35  VPMTSLMNGRRRRDPTLLSTILEVPSTSSLLP-ADASIFCL 74


>AF101316-3|AAC69232.2|  508|Caenorhabditis elegans Hypothetical
           protein F52F10.2 protein.
          Length = 508

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +2

Query: 110 KYWLIQ*NIIRPVLCYLFLFVNYLTSGR*Y 199
           K+ LI   II  V C+++L + YL +GR Y
Sbjct: 122 KWPLIAGRIIAMVACFIYLCIEYLPTGRRY 151


>U40160-3|AAA81157.2|  363|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 137, isoform a protein.
          Length = 363

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +2

Query: 449 MTTLSVPSTRTLVPNATRSYFCLQQ 523
           + ++S+PST T +P  T +  CL+Q
Sbjct: 91  LASISLPSTSTAIPKVTETASCLRQ 115


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,685,544
Number of Sequences: 27780
Number of extensions: 346076
Number of successful extensions: 864
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 822
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 864
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1714401074
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)