Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc2b12
(701 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1002.04c |taf11||transcription factor TFIID complex subunit ... 33 0.052
SPAC22F8.10c |sap145||U2 snRNP-associated protein Sap145 |Schizo... 31 0.21
SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces pomb... 29 0.85
SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory sub... 28 1.1
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig... 27 2.6
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo... 26 4.5
SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces pombe... 26 4.5
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 25 7.9
SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc... 25 7.9
>SPAC1002.04c |taf11||transcription factor TFIID complex subunit
Taf11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 199
Score = 32.7 bits (71), Expect = 0.052
Identities = 14/29 (48%), Positives = 20/29 (68%)
Frame = +2
Query: 605 LVSNFTEEQLNRYEMYRRAAFPKAAVXRL 691
L+ +F EEQ+ RYE++RRA K V +L
Sbjct: 96 LLESFDEEQMQRYEVFRRANLNKTNVKKL 124
>SPAC22F8.10c |sap145||U2 snRNP-associated protein Sap145
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 30.7 bits (66), Expect = 0.21
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
Frame = +2
Query: 230 DTYAEISQNVETVHKADELGNIYTDNSEYLNQTDVLTDVTDHYESYGND---YQFENSYN 400
D E + N+ K++ GN Y N V T + D E ND QF++ +N
Sbjct: 76 DQLTENNDNLYNDKKSN--GNFYDTNKTDSVDGMVYTTIVDSVELDPNDPLIEQFKDVFN 133
Query: 401 QFQSDGEKYD 430
+F++DG++ D
Sbjct: 134 RFKADGQEKD 143
>SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 929
Score = 28.7 bits (61), Expect = 0.85
Identities = 15/56 (26%), Positives = 31/56 (55%), Gaps = 4/56 (7%)
Frame = +2
Query: 299 TDNSEYLNQTDVLTDV----TDHYESYGNDYQFENSYNQFQSDGEKYDRGVGDAES 454
TD+++ +N++D +++ +DH + +D + +N N S +K + DAES
Sbjct: 193 TDSADNMNESDSESEIESSDSDHDDGENSDSKLDNLRNYIVSLNQKRKKDEADAES 248
>SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory
subunit Ekc1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 838
Score = 28.3 bits (60), Expect = 1.1
Identities = 18/82 (21%), Positives = 36/82 (43%), Gaps = 5/82 (6%)
Frame = +2
Query: 200 QNTNIETEVIDTYAEISQNVETVHK-----ADELGNIYTDNSEYLNQTDVLTDVTDHYES 364
++ + + +V++ + E+S N + + D L + + + D D DH+
Sbjct: 692 ESNSSDDDVVEVHRELSHNSSSNDEDDGNDEDPLSREMSRRLSFESANDSDQDNRDHFAQ 751
Query: 365 YGNDYQFENSYNQFQSDGEKYD 430
Y + +N+ NQF S E D
Sbjct: 752 YMSQQISDNNANQFSSSDEDDD 773
>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
E3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1647
Score = 27.1 bits (57), Expect = 2.6
Identities = 17/69 (24%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Frame = +2
Query: 248 SQNVETVHKADELGNIYTDNSEYLNQTD-VLTDVTDHYESYGNDYQFENSYNQFQSDGEK 424
S + ET + + TD+S+Y +Q D V D D + N+ ++++ + S+ +
Sbjct: 186 SNSYETTYSDSSNYHTSTDSSQYNDQDDHVYDDTNDGTDDDINNNEYKDDESSSGSESYE 245
Query: 425 YDRGVGDAE 451
D V + E
Sbjct: 246 RDEDVDEEE 254
>SPAC17C9.03 |tif471||translation initiation factor eIF4G
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1403
Score = 26.2 bits (55), Expect = 4.5
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = +2
Query: 353 HYESYGNDYQFENSYNQFQSDGEKYDRGVGDAESSVVP 466
HY+ YGN + N Y+ +Q G Y+ + S P
Sbjct: 303 HYDRYGNSHPSYNKYSHYQ-HGFNYNNSGNNRNESGHP 339
>SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 886
Score = 26.2 bits (55), Expect = 4.5
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +2
Query: 335 LTDVTDHYESYGNDYQFENSYNQFQSD 415
LT V +HY++YGN E + ++ D
Sbjct: 671 LTIVCNHYQNYGNSESTEFELSNYKQD 697
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 25.4 bits (53), Expect = 7.9
Identities = 18/70 (25%), Positives = 29/70 (41%), Gaps = 3/70 (4%)
Frame = +2
Query: 182 NYGESDQNTNIETEVIDTYAEISQNVETVHKADELGNIYTDNSEY---LNQTDVLTDVTD 352
NY S + E I S VE + + + N Y NS+Y L+ D +D+
Sbjct: 170 NYSSSQKEIYDNDETIPKPP--SPEVEKIETSTSVENAYITNSQYNDTLDMEDQTSDLIT 227
Query: 353 HYESYGNDYQ 382
+E D++
Sbjct: 228 TFEHENEDHE 237
>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
orphan|Schizosaccharomyces pombe|chr 1|||Manual
Length = 776
Score = 25.4 bits (53), Expect = 7.9
Identities = 17/68 (25%), Positives = 33/68 (48%)
Frame = +2
Query: 218 TEVIDTYAEISQNVETVHKADELGNIYTDNSEYLNQTDVLTDVTDHYESYGNDYQFENSY 397
T + +IS +ET+ K+D + ++N +N+ + + E Y FE+ Y
Sbjct: 244 TAAMQAIDDISGTIETI-KSD-CYKVESENKGLINEVMDMRNFVQQLEQ--ELYAFEDDY 299
Query: 398 NQFQSDGE 421
++ Q+D E
Sbjct: 300 SRIQNDEE 307
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,176,923
Number of Sequences: 5004
Number of extensions: 38622
Number of successful extensions: 145
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -