Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc2b12
(701 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X83928-1|CAA58780.1| 211|Homo sapiens transcription factor TFII... 63 1e-09
D63705-1|BAA23620.1| 211|Homo sapiens TFIID subunit p30beta pro... 63 1e-09
CR542068-1|CAG46865.1| 211|Homo sapiens TAF11 protein. 63 1e-09
BT019405-1|AAV38212.1| 211|Homo sapiens TAF11 RNA polymerase II... 63 1e-09
BT019404-1|AAV38211.1| 211|Homo sapiens TAF11 RNA polymerase II... 63 1e-09
BC021972-1|AAH21972.1| 211|Homo sapiens TAF11 RNA polymerase II... 63 1e-09
AY217767-1|AAO25652.1| 211|Homo sapiens TAF11 RNA polymerase II... 63 1e-09
AL033520-1|CAB96725.1| 211|Homo sapiens TAF11 RNA polymerase II... 63 1e-09
M84378-1|AAA59604.1| 365|Homo sapiens lymphocyte antigen protein. 31 5.3
AF440105-1|AAL35227.1| 181|Homo sapiens MHC class I antigen pro... 31 5.3
AF157564-1|AAD45324.1| 181|Homo sapiens MHC class I antigen pro... 31 5.3
EF370118-1|ABN45878.1| 181|Homo sapiens MHC class I antigen pro... 30 9.2
AY834199-1|AAW22618.1| 206|Homo sapiens MHC class I antigen pro... 30 9.2
AY128677-1|AAN01241.1| 181|Homo sapiens MHC class I antigen pro... 30 9.2
>X83928-1|CAA58780.1| 211|Homo sapiens transcription factor TFIID
subunit TAFII28 protein.
Length = 211
Score = 62.9 bits (146), Expect = 1e-09
Identities = 27/35 (77%), Positives = 34/35 (97%)
Frame = +2
Query: 596 MQVLVSNFTEEQLNRYEMYRRAAFPKAAVXRLMQT 700
MQ+LVS+F+EEQLNRYEMYRR+AFPKAA+ RL+Q+
Sbjct: 106 MQILVSSFSEEQLNRYEMYRRSAFPKAAIKRLIQS 140
>D63705-1|BAA23620.1| 211|Homo sapiens TFIID subunit p30beta
protein.
Length = 211
Score = 62.9 bits (146), Expect = 1e-09
Identities = 27/35 (77%), Positives = 34/35 (97%)
Frame = +2
Query: 596 MQVLVSNFTEEQLNRYEMYRRAAFPKAAVXRLMQT 700
MQ+LVS+F+EEQLNRYEMYRR+AFPKAA+ RL+Q+
Sbjct: 106 MQILVSSFSEEQLNRYEMYRRSAFPKAAIKRLIQS 140
>CR542068-1|CAG46865.1| 211|Homo sapiens TAF11 protein.
Length = 211
Score = 62.9 bits (146), Expect = 1e-09
Identities = 27/35 (77%), Positives = 34/35 (97%)
Frame = +2
Query: 596 MQVLVSNFTEEQLNRYEMYRRAAFPKAAVXRLMQT 700
MQ+LVS+F+EEQLNRYEMYRR+AFPKAA+ RL+Q+
Sbjct: 106 MQILVSSFSEEQLNRYEMYRRSAFPKAAIKRLIQS 140
>BT019405-1|AAV38212.1| 211|Homo sapiens TAF11 RNA polymerase II,
TATA box binding protein (TBP)-associated factor, 28kD
protein.
Length = 211
Score = 62.9 bits (146), Expect = 1e-09
Identities = 27/35 (77%), Positives = 34/35 (97%)
Frame = +2
Query: 596 MQVLVSNFTEEQLNRYEMYRRAAFPKAAVXRLMQT 700
MQ+LVS+F+EEQLNRYEMYRR+AFPKAA+ RL+Q+
Sbjct: 106 MQILVSSFSEEQLNRYEMYRRSAFPKAAIKRLIQS 140
>BT019404-1|AAV38211.1| 211|Homo sapiens TAF11 RNA polymerase II,
TATA box binding protein (TBP)-associated factor, 28kD
protein.
Length = 211
Score = 62.9 bits (146), Expect = 1e-09
Identities = 27/35 (77%), Positives = 34/35 (97%)
Frame = +2
Query: 596 MQVLVSNFTEEQLNRYEMYRRAAFPKAAVXRLMQT 700
MQ+LVS+F+EEQLNRYEMYRR+AFPKAA+ RL+Q+
Sbjct: 106 MQILVSSFSEEQLNRYEMYRRSAFPKAAIKRLIQS 140
>BC021972-1|AAH21972.1| 211|Homo sapiens TAF11 RNA polymerase II,
TATA box binding protein (TBP)-associated factor, 28kD
protein.
Length = 211
Score = 62.9 bits (146), Expect = 1e-09
Identities = 27/35 (77%), Positives = 34/35 (97%)
Frame = +2
Query: 596 MQVLVSNFTEEQLNRYEMYRRAAFPKAAVXRLMQT 700
MQ+LVS+F+EEQLNRYEMYRR+AFPKAA+ RL+Q+
Sbjct: 106 MQILVSSFSEEQLNRYEMYRRSAFPKAAIKRLIQS 140
>AY217767-1|AAO25652.1| 211|Homo sapiens TAF11 RNA polymerase II,
TATA box binding protein (TBP)-associated factor, 28kD
protein.
Length = 211
Score = 62.9 bits (146), Expect = 1e-09
Identities = 27/35 (77%), Positives = 34/35 (97%)
Frame = +2
Query: 596 MQVLVSNFTEEQLNRYEMYRRAAFPKAAVXRLMQT 700
MQ+LVS+F+EEQLNRYEMYRR+AFPKAA+ RL+Q+
Sbjct: 106 MQILVSSFSEEQLNRYEMYRRSAFPKAAIKRLIQS 140
>AL033520-1|CAB96725.1| 211|Homo sapiens TAF11 RNA polymerase II,
TATA box binding proteinonent, Christmas disease, hemo
protein.
Length = 211
Score = 62.9 bits (146), Expect = 1e-09
Identities = 27/35 (77%), Positives = 34/35 (97%)
Frame = +2
Query: 596 MQVLVSNFTEEQLNRYEMYRRAAFPKAAVXRLMQT 700
MQ+LVS+F+EEQLNRYEMYRR+AFPKAA+ RL+Q+
Sbjct: 106 MQILVSSFSEEQLNRYEMYRRSAFPKAAIKRLIQS 140
>M84378-1|AAA59604.1| 365|Homo sapiens lymphocyte antigen protein.
Length = 365
Score = 30.7 bits (66), Expect = 5.3
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Frame = +2
Query: 368 GNDYQFENSYNQFQSDGEKYDRGVGDAES---SVVPATTDFHHTESSHIYEFQTA 523
G+D++F Y+Q+ DG+ Y D S + + A T H E++H+ E Q A
Sbjct: 128 GSDWRFLRGYHQYAYDGKDYIALKEDLRSWTAADMAAQTTKHKWEAAHVAEQQRA 182
>AF440105-1|AAL35227.1| 181|Homo sapiens MHC class I antigen
protein.
Length = 181
Score = 30.7 bits (66), Expect = 5.3
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Frame = +2
Query: 368 GNDYQFENSYNQFQSDGEKYDRGVGDAES---SVVPATTDFHHTESSHIYEFQTA 523
G+D++F Y+Q+ DG+ Y D S + + A T H E++H+ E Q A
Sbjct: 103 GSDWRFLRGYHQYAYDGKDYIALKEDLRSWTAADMAAQTTKHKWEAAHVAEQQRA 157
>AF157564-1|AAD45324.1| 181|Homo sapiens MHC class I antigen
protein.
Length = 181
Score = 30.7 bits (66), Expect = 5.3
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Frame = +2
Query: 368 GNDYQFENSYNQFQSDGEKYDRGVGDAES---SVVPATTDFHHTESSHIYEFQTA 523
G+D++F Y+Q+ DG+ Y D S + + A T H E++H+ E Q A
Sbjct: 103 GSDWRFLRGYHQYAYDGKDYIALKEDLRSWTAADMAAQTTKHKWEAAHVAEQQRA 157
>EF370118-1|ABN45878.1| 181|Homo sapiens MHC class I antigen
protein.
Length = 181
Score = 29.9 bits (64), Expect = 9.2
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Frame = +2
Query: 368 GNDYQFENSYNQFQSDGEKYDRGVGDAES---SVVPATTDFHHTESSHIYE 511
G+D++F Y+QF DG+ Y D S + + A T H E++H+ E
Sbjct: 103 GSDWRFLRGYHQFAYDGKDYIALKEDLRSWTAADMAAQTTKHKWEAAHVAE 153
>AY834199-1|AAW22618.1| 206|Homo sapiens MHC class I antigen
protein.
Length = 206
Score = 29.9 bits (64), Expect = 9.2
Identities = 27/107 (25%), Positives = 50/107 (46%), Gaps = 7/107 (6%)
Frame = +2
Query: 212 IETEVIDTYAEISQNVETVHKAD--ELGNIYTDNSEYLNQTDVLTDVTDHYES--YGNDY 379
IE E + + + ++NV+ + D +LG + Y NQ++ + G+D+
Sbjct: 76 IEQEGPEYWDQETRNVKAQSQTDRVDLGTL----RGYYNQSEAGSHTVQRMYGCDVGSDW 131
Query: 380 QFENSYNQFQSDGEKYDRGVGDAES---SVVPATTDFHHTESSHIYE 511
+F Y+Q+ DG+ Y D S + + A T H E++H+ E
Sbjct: 132 RFLRGYHQYAYDGKDYIALKEDLRSWTAADMAAQTTKHKWEAAHVAE 178
>AY128677-1|AAN01241.1| 181|Homo sapiens MHC class I antigen
protein.
Length = 181
Score = 29.9 bits (64), Expect = 9.2
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Frame = +2
Query: 368 GNDYQFENSYNQFQSDGEKYDRGVGDAES---SVVPATTDFHHTESSHIYE 511
G+D++F Y+QF DG+ Y D S + + A T H E++H+ E
Sbjct: 103 GSDWRFLRGYHQFAYDGKDYIALKEDLRSWTAADMAAQTTKHKWEAAHVAE 153
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 69,561,479
Number of Sequences: 237096
Number of extensions: 1096182
Number of successful extensions: 3301
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 3220
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3300
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8119219030
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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