Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc2b12
         (701 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U06457-1|AAB19245.1|  196|Drosophila melanogaster transcription ...    69   8e-12
AE014134-1688|AAF52806.1|  196|Drosophila melanogaster CG4079-PA...    69   8e-12
DQ162845-1|ABA42953.1| 1715|Drosophila melanogaster TRF2 protein.      29   4.6  
AY061296-1|AAL28844.1|  339|Drosophila melanogaster LD20718p pro...    29   6.1  
AE014298-1807|AAF48199.2|  339|Drosophila melanogaster CG4004-PB...    29   6.1  
BT011169-1|AAR84384.1|  727|Drosophila melanogaster GH09630p pro...    29   8.1  
AE014296-3533|AAS65088.1| 1094|Drosophila melanogaster CG33288-P...    29   8.1  

>U06457-1|AAB19245.1|  196|Drosophila melanogaster transcription
           initiation factorTFIID 28 kDa subunit protein.
          Length = 196

 Score = 68.5 bits (160), Expect = 8e-12
 Identities = 32/35 (91%), Positives = 34/35 (97%)
 Frame = +2

Query: 596 MQVLVSNFTEEQLNRYEMYRRAAFPKAAVXRLMQT 700
           MQVLVSNFTEEQL+RYEMYRR+AFPKAAV RLMQT
Sbjct: 89  MQVLVSNFTEEQLDRYEMYRRSAFPKAAVKRLMQT 123


>AE014134-1688|AAF52806.1|  196|Drosophila melanogaster CG4079-PA
           protein.
          Length = 196

 Score = 68.5 bits (160), Expect = 8e-12
 Identities = 32/35 (91%), Positives = 34/35 (97%)
 Frame = +2

Query: 596 MQVLVSNFTEEQLNRYEMYRRAAFPKAAVXRLMQT 700
           MQVLVSNFTEEQL+RYEMYRR+AFPKAAV RLMQT
Sbjct: 89  MQVLVSNFTEEQLDRYEMYRRSAFPKAAVKRLMQT 123


>DQ162845-1|ABA42953.1| 1715|Drosophila melanogaster TRF2 protein.
          Length = 1715

 Score = 29.5 bits (63), Expect = 4.6
 Identities = 24/101 (23%), Positives = 48/101 (47%), Gaps = 8/101 (7%)
 Frame = +2

Query: 179 VNYGESDQNTNIET------EVIDTYAEISQ-NVETVHKADELGNIYTDNS-EYLNQTDV 334
           +N+G  D N   +       +  D Y E++  N ++  +  EL +   D+S EY +   V
Sbjct: 271 LNHGNQDSNDEYQESNHGNQDSNDEYQELNHSNQDSNDEYQELNHGDQDSSDEYQDLNHV 330

Query: 335 LTDVTDHYESYGNDYQFENSYNQFQSDGEKYDRGVGDAESS 457
             D    Y+++ ++YQ  +S +++Q+   +Y     D E +
Sbjct: 331 NQDSNHEYQAWNHEYQ--DSNHEYQALNREYQYPESDEEEA 369


>AY061296-1|AAL28844.1|  339|Drosophila melanogaster LD20718p
           protein.
          Length = 339

 Score = 29.1 bits (62), Expect = 6.1
 Identities = 19/78 (24%), Positives = 35/78 (44%)
 Frame = +2

Query: 293 IYTDNSEYLNQTDVLTDVTDHYESYGNDYQFENSYNQFQSDGEKYDRGVGDAESSVVPAT 472
           +Y D    L     L ++    +SY N +  +   N F++   +  R V D+ ++  P  
Sbjct: 11  LYRDRQLKLESYSRLLELLRTTDSYANIHTLKRKINNFRTSYRRELRKVLDSGNTYKP-- 68

Query: 473 TDFHHTESSHIYEFQTAE 526
           T ++  E   +YE +T E
Sbjct: 69  TLWYFKELDFLYELETGE 86


>AE014298-1807|AAF48199.2|  339|Drosophila melanogaster CG4004-PB,
           isoform B protein.
          Length = 339

 Score = 29.1 bits (62), Expect = 6.1
 Identities = 19/78 (24%), Positives = 35/78 (44%)
 Frame = +2

Query: 293 IYTDNSEYLNQTDVLTDVTDHYESYGNDYQFENSYNQFQSDGEKYDRGVGDAESSVVPAT 472
           +Y D    L     L ++    +SY N +  +   N F++   +  R V D+ ++  P  
Sbjct: 11  LYRDRQLKLESYSRLLELLRTTDSYANIHTLKRKINNFRTSYRRELRKVLDSGNTYKP-- 68

Query: 473 TDFHHTESSHIYEFQTAE 526
           T ++  E   +YE +T E
Sbjct: 69  TLWYFKELDFLYELETGE 86


>BT011169-1|AAR84384.1|  727|Drosophila melanogaster GH09630p
           protein.
          Length = 727

 Score = 28.7 bits (61), Expect = 8.1
 Identities = 10/16 (62%), Positives = 14/16 (87%)
 Frame = -2

Query: 274 FVNSFNILRNFCICIY 227
           FVNS+N+L++F  CIY
Sbjct: 706 FVNSYNLLKHFARCIY 721


>AE014296-3533|AAS65088.1| 1094|Drosophila melanogaster CG33288-PB
           protein.
          Length = 1094

 Score = 28.7 bits (61), Expect = 8.1
 Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
 Frame = +2

Query: 299 TDNSEYLNQTDVLTD---VTDHYESYGNDYQFENSYNQFQSDGE-KYDRG 436
           TD+S+ +N+   + D   VT   E    D   E+S    +SDGE K  RG
Sbjct: 745 TDSSKVINEIRFINDGVDVTSRVEEQMPDTPLESSVEDLESDGEQKMQRG 794


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,971,775
Number of Sequences: 53049
Number of extensions: 387749
Number of successful extensions: 1469
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1437
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1469
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3087795150
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)