Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc2b11
         (364 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE013599-3593|AAM68248.1|   82|Drosophila melanogaster CG30415-P...   108   2e-24
AE013599-3592|AAM68247.1|   82|Drosophila melanogaster CG30415-P...   108   2e-24
AE013599-534|AAF59173.2|  403|Drosophila melanogaster CG17853-PA...    27   5.6  

>AE013599-3593|AAM68248.1|   82|Drosophila melanogaster CG30415-PB,
           isoform B protein.
          Length = 82

 Score =  108 bits (259), Expect = 2e-24
 Identities = 44/71 (61%), Positives = 55/71 (77%)
 Frame = +1

Query: 58  GRPMKFPYTFSAKVAQFPYKFYLQNLWLWRYWAAAIVISSPLFYKIHKMSNSPENVSKWA 237
           GRPM++PYTFSAK+AQFP K Y++N W+WRY+  A V   P+FYKI K++NSPEN   WA
Sbjct: 12  GRPMRYPYTFSAKIAQFPIKHYIKNQWIWRYYFIAAVACVPVFYKISKLANSPENKKAWA 71

Query: 238 EIRRKEAAEHH 270
           E + KE AEHH
Sbjct: 72  ESQAKEHAEHH 82


>AE013599-3592|AAM68247.1|   82|Drosophila melanogaster CG30415-PA,
           isoform A protein.
          Length = 82

 Score =  108 bits (259), Expect = 2e-24
 Identities = 44/71 (61%), Positives = 55/71 (77%)
 Frame = +1

Query: 58  GRPMKFPYTFSAKVAQFPYKFYLQNLWLWRYWAAAIVISSPLFYKIHKMSNSPENVSKWA 237
           GRPM++PYTFSAK+AQFP K Y++N W+WRY+  A V   P+FYKI K++NSPEN   WA
Sbjct: 12  GRPMRYPYTFSAKIAQFPIKHYIKNQWIWRYYFIAAVACVPVFYKISKLANSPENKKAWA 71

Query: 238 EIRRKEAAEHH 270
           E + KE AEHH
Sbjct: 72  ESQAKEHAEHH 82


>AE013599-534|AAF59173.2|  403|Drosophila melanogaster CG17853-PA
           protein.
          Length = 403

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
 Frame = +1

Query: 1   EVFSIFSSFTYALTMSDAPGRPMKFPYTFSAKVAQFPYKFYLQNLWL-WRYWAAAIVISS 177
           +++ +FS FTY + +      P+ FP  +   +A+FP +  LQ+L L    W  A+   +
Sbjct: 46  KIWRVFS-FTYNMVIL-----PVSFPINYVIHLAEFPPELLLQSLQLCLNTWCFALKFFT 99

Query: 178 PLFY 189
            + Y
Sbjct: 100 LIVY 103


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,356,002
Number of Sequences: 53049
Number of extensions: 361860
Number of successful extensions: 893
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 884
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 893
length of database: 24,988,368
effective HSP length: 76
effective length of database: 20,956,644
effective search space used: 922092336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)