Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc2b08
(302 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1571 - 27935756-27935950,27936048-27936199,27936294-279364... 29 0.92
04_04_0447 - 25297351-25297575,25297663-25298370,25298824-252991... 27 3.7
02_05_0566 - 30017031-30017309,30018077-30018172,30018261-300183... 27 3.7
11_06_0235 + 21588212-21589029,21589426-21591358 26 4.9
09_04_0272 - 16278136-16278289,16278873-16278970,16279090-162792... 26 4.9
07_01_0733 + 5570084-5570282,5570395-5570600,5572484-5572624,557... 26 4.9
01_06_0564 - 30271749-30271759,30271847-30271922,30272878-302729... 26 4.9
10_08_0451 + 18033065-18033253,18033746-18033805,18034256-180343... 26 6.5
03_02_0879 + 12097602-12098120,12099215-12099254,12099550-120996... 26 6.5
02_02_0509 - 11064209-11064470,11065945-11066132,11066249-110664... 26 6.5
01_01_0433 + 3282195-3285185 26 6.5
11_01_0146 + 1224143-1224409,1224760-1224888,1225759-1225815,122... 25 8.6
09_04_0305 - 16516481-16516638,16517135-16517274,16519196-16520148 25 8.6
07_01_0413 - 3155080-3155274,3155628-3155933,3156062-3156163,315... 25 8.6
>08_02_1571 -
27935756-27935950,27936048-27936199,27936294-27936403,
27936845-27937050,27937212-27937295,27937367-27937525,
27937621-27937728,27938103-27938278,27938376-27938462,
27938546-27938657,27938737-27938817,27938890-27938943,
27939107-27939183,27939262-27939331,27939552-27939666,
27939840-27939937,27940041-27940179,27940267-27940868,
27941270-27941399,27941471-27941529
Length = 937
Score = 28.7 bits (61), Expect = 0.92
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = +2
Query: 143 EEEIKYMEIDDGEEIDTVKTFLRNSMSTAEQRDLYALAL 259
+ E+ + G++ID V TF + TA+QRDLY A+
Sbjct: 41 QREVAVTQTIAGKQIDRVFTFDKVFGPTAKQRDLYDQAI 79
>04_04_0447 -
25297351-25297575,25297663-25298370,25298824-25299123,
25299876-25299927,25300530-25300673,25301002-25301258,
25301533-25301739,25301819-25301992,25302409-25302432,
25302610-25302677,25304607-25304665,25304802-25304877,
25304965-25305070,25305268-25305377,25305831-25305995,
25306571-25306656,25306893-25306957,25307280-25307330,
25309009-25309056,25309677-25309796,25310226-25310301,
25310780-25310877,25312149-25312404,25313117-25313238
Length = 1198
Score = 26.6 bits (56), Expect = 3.7
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = +2
Query: 23 IERTVTRWHLLSDNVLLKIGEVAQRLNYYLQEYANL 130
+E +TR+H DN K+ E+ + L+ LQ+ N+
Sbjct: 717 VENALTRYHEACDNAKRKVLELLRGLSSELQDKINV 752
>02_05_0566 -
30017031-30017309,30018077-30018172,30018261-30018377,
30018538-30018667,30018866-30019029,30019480-30019485
Length = 263
Score = 26.6 bits (56), Expect = 3.7
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 7/53 (13%)
Frame = +2
Query: 14 ARMIERTVTRWHLLSDNVLLK-------IGEVAQRLNYYLQEYANLEMQIEEE 151
+R+ + + RW + DN L+K G+V Q ++ LQ + EM++E E
Sbjct: 206 SRVGDMQIGRWFMTKDNALVKDSTVNVVSGKVKQEVHLKLQNVESGEMELELE 258
>11_06_0235 + 21588212-21589029,21589426-21591358
Length = 916
Score = 26.2 bits (55), Expect = 4.9
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +2
Query: 77 IGEVAQRLNYYLQEYANLEMQIEEEIKYMEID 172
IG + +L L E NL+ ++E IK+++I+
Sbjct: 8 IGTLLPKLGKLLSEEYNLQKNVKEGIKFLKIE 39
>09_04_0272 -
16278136-16278289,16278873-16278970,16279090-16279230,
16279701-16279865,16279941-16280117,16280330-16280510,
16280784-16280829,16281178-16281241,16281331-16281353,
16281964-16282036,16282410-16282541,16283343-16283429,
16283488-16283700
Length = 517
Score = 26.2 bits (55), Expect = 4.9
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = +1
Query: 43 LAFIVG*CIIKNWRGRPTTKLLFARIRKL 129
+A + G C++ W+G PTT L+ + K+
Sbjct: 203 IALVCGNCVV--WKGAPTTPLITIAMTKI 229
>07_01_0733 + 5570084-5570282,5570395-5570600,5572484-5572624,
5572773-5572949,5573049-5573145,5573575-5573687,
5573774-5573896,5574004-5574075,5575340-5575432,
5575564-5575674,5575767-5575889,5576834-5576890,
5576939-5577022,5577140-5577214,5577418-5577554,
5577719-5577853,5579029-5579168,5579334-5579399,
5579732-5579838,5579910-5579990,5580064-5580138,
5580224-5580325,5581837-5582005,5582090-5582217,
5582596-5582679,5582779-5582879,5583729-5583882,
5583964-5584038,5584112-5584262,5584463-5585078,
5585427-5585487,5585874-5586019,5586104-5586287,
5586363-5586440,5586603-5586931,5587023-5587199,
5587571-5587667,5587742-5587897,5587962-5588198,
5588271-5588354,5588426-5588486,5588762-5588898
Length = 1912
Score = 26.2 bits (55), Expect = 4.9
Identities = 16/48 (33%), Positives = 25/48 (52%)
Frame = +2
Query: 143 EEEIKYMEIDDGEEIDTVKTFLRNSMSTAEQRDLYALALKLNSLINNI 286
E + K EI +G E+D K+ R +QR+L AL+ +L +I
Sbjct: 1566 ENDNKGQEIANGTEVDDKKSNKRLKEKARKQRELEISALEERALQRDI 1613
>01_06_0564 -
30271749-30271759,30271847-30271922,30272878-30272919,
30273065-30273206,30273278-30273339,30273460-30273526,
30273644-30273834
Length = 196
Score = 26.2 bits (55), Expect = 4.9
Identities = 9/34 (26%), Positives = 22/34 (64%)
Frame = +2
Query: 83 EVAQRLNYYLQEYANLEMQIEEEIKYMEIDDGEE 184
++ Q L++ ++ +E+++++M +DDGEE
Sbjct: 83 DIRQERRAELEKVGSMCDLLEKQLRFMTVDDGEE 116
>10_08_0451 +
18033065-18033253,18033746-18033805,18034256-18034324,
18034751-18034786,18035081-18035146,18035345-18035443,
18035543-18035620,18035724-18035802,18035999-18036093,
18036251-18036335,18036505-18036698,18036804-18036922,
18037015-18037057
Length = 403
Score = 25.8 bits (54), Expect = 6.5
Identities = 12/40 (30%), Positives = 25/40 (62%)
Frame = +2
Query: 35 VTRWHLLSDNVLLKIGEVAQRLNYYLQEYANLEMQIEEEI 154
+ R + LSD V++ G + YY++ + N +++IEE++
Sbjct: 122 IVRENELSDKVIVLHGRIEY---YYIRIFENQDVEIEEKV 158
>03_02_0879 +
12097602-12098120,12099215-12099254,12099550-12099601,
12099946-12100008,12100079-12100148,12100452-12100778
Length = 356
Score = 25.8 bits (54), Expect = 6.5
Identities = 11/28 (39%), Positives = 20/28 (71%)
Frame = +2
Query: 83 EVAQRLNYYLQEYANLEMQIEEEIKYME 166
EV +RL+ L+ L+++IEE+ KY++
Sbjct: 238 EVQKRLHEQLEIQRKLQLRIEEQGKYLQ 265
>02_02_0509 -
11064209-11064470,11065945-11066132,11066249-11066493,
11066816-11066987,11067090-11067496,11068443-11068587
Length = 472
Score = 25.8 bits (54), Expect = 6.5
Identities = 12/32 (37%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Frame = +2
Query: 176 GEEIDTVKTFLRNSMSTAEQRDLY-ALALKLN 268
G+ +DT+ T + S++ A Q+D++ A AL L+
Sbjct: 378 GDNVDTLYTIMLESIAMALQKDIHLAFALPLS 409
>01_01_0433 + 3282195-3285185
Length = 996
Score = 25.8 bits (54), Expect = 6.5
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = -1
Query: 266 LILMLTRTNHAVPPWTWNCAKKS 198
L L + N A+PPW W K+S
Sbjct: 521 LDLSNNQMNGAIPPWAWETWKES 543
>11_01_0146 +
1224143-1224409,1224760-1224888,1225759-1225815,
1225903-1226201,1226474-1226565,1226946-1227160,
1227205-1227228,1227314-1227497,1227612-1227742
Length = 465
Score = 25.4 bits (53), Expect = 8.6
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = -1
Query: 257 MLTRTNHAVPPWTWN 213
+L R NHAVP W N
Sbjct: 111 LLDRANHAVPTWLMN 125
>09_04_0305 - 16516481-16516638,16517135-16517274,16519196-16520148
Length = 416
Score = 25.4 bits (53), Expect = 8.6
Identities = 12/30 (40%), Positives = 14/30 (46%)
Frame = +3
Query: 162 WKLMTAKKSTLSRLFCAIPCPRRNSVICTR 251
W L T TL+ IPCPR +V R
Sbjct: 153 WLLQTVIAVTLATTVLGIPCPRSFAVSLVR 182
>07_01_0413 -
3155080-3155274,3155628-3155933,3156062-3156163,
3156262-3156705
Length = 348
Score = 25.4 bits (53), Expect = 8.6
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +2
Query: 65 VLLKIGEVAQRLNYYLQEYANLEMQIEEEIKYMEIDDGEE 184
+LL + + +EYAN E + EE E +DGEE
Sbjct: 53 ILLPLAAAGGEFSSEEEEYANEEEEEGEEYVEEEEEDGEE 92
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,998,700
Number of Sequences: 37544
Number of extensions: 113976
Number of successful extensions: 365
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 360
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 365
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 351703996
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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