Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc2b08
(302 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_8597| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 0.72
SB_11016| Best HMM Match : DUF726 (HMM E-Value=1.3e-08) 29 0.95
SB_39225| Best HMM Match : NIF (HMM E-Value=0) 28 1.3
SB_19119| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 2.2
SB_51397| Best HMM Match : CRF (HMM E-Value=5.3) 27 2.9
SB_17268| Best HMM Match : Ribosomal_L29 (HMM E-Value=1.7) 27 3.9
SB_9641| Best HMM Match : MAT1 (HMM E-Value=0.47) 27 3.9
SB_9193| Best HMM Match : FCH (HMM E-Value=1.6) 26 5.1
SB_46609| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 5.1
SB_21261| Best HMM Match : APSES (HMM E-Value=2.3) 26 5.1
SB_5246| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 5.1
SB_42534| Best HMM Match : DUF699 (HMM E-Value=0) 26 6.7
SB_45044| Best HMM Match : Thioredoxin (HMM E-Value=1.1) 25 8.9
SB_17247| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 8.9
SB_9417| Best HMM Match : FragX_IP (HMM E-Value=0) 25 8.9
>SB_8597| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 632
Score = 29.1 bits (62), Expect = 0.72
Identities = 20/71 (28%), Positives = 37/71 (52%)
Frame = +2
Query: 41 RWHLLSDNVLLKIGEVAQRLNYYLQEYANLEMQIEEEIKYMEIDDGEEIDTVKTFLRNSM 220
RWH+ + +L + Q ++ EY + + EE + + I + + +D ++ L +S
Sbjct: 295 RWHIDTMMKVLTTQSLVQVGSWCCGEYGDKLLVDIEEDEPLGITENDVLDVLECVLYSSH 354
Query: 221 STAEQRDLYAL 253
ST+ RD YAL
Sbjct: 355 STSTTRD-YAL 364
>SB_11016| Best HMM Match : DUF726 (HMM E-Value=1.3e-08)
Length = 442
Score = 28.7 bits (61), Expect = 0.95
Identities = 13/43 (30%), Positives = 27/43 (62%)
Frame = +2
Query: 86 VAQRLNYYLQEYANLEMQIEEEIKYMEIDDGEEIDTVKTFLRN 214
+A+R++ +EY N+E +IE + + ++ GE + V T L++
Sbjct: 74 IAERIDN-CEEYDNIESEIESAVSILILELGERANWVVTILKD 115
>SB_39225| Best HMM Match : NIF (HMM E-Value=0)
Length = 1772
Score = 28.3 bits (60), Expect = 1.3
Identities = 16/44 (36%), Positives = 25/44 (56%)
Frame = +2
Query: 59 DNVLLKIGEVAQRLNYYLQEYANLEMQIEEEIKYMEIDDGEEID 190
+N +K+ + + Y Q ++ +IEEE K ID+GEEID
Sbjct: 665 ENDHIKVDRLMELHFKYYQRVQEVDAKIEEE-KQELIDEGEEID 707
>SB_19119| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1151
Score = 27.5 bits (58), Expect = 2.2
Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = +3
Query: 114 KNTQTWKCKLRKKLNIWKLMTAKKSTLSRLFCAIPCPRRNSV-ICTR 251
K + C + +++ W+ M + ST ++L C I RR+ V C R
Sbjct: 937 KEKTSMLCAVSSEVDFWESMFKRYSTWTKLVCCIAWLRRSVVAFCYR 983
>SB_51397| Best HMM Match : CRF (HMM E-Value=5.3)
Length = 79
Score = 27.1 bits (57), Expect = 2.9
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +3
Query: 120 TQTWKCKLRKKLNIWKLMTAKKSTLSRL 203
T + +K+L IWK+ TAK +LS L
Sbjct: 2 TPPYDLNKQKRLQIWKINTAKLPSLSEL 29
>SB_17268| Best HMM Match : Ribosomal_L29 (HMM E-Value=1.7)
Length = 434
Score = 26.6 bits (56), Expect = 3.9
Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
Frame = +2
Query: 5 LKSARMIERTVTRWHLLSDNVLLKIGEVAQRLNYYLQEYANLEMQIEEEIKYMEIDDGEE 184
L+ R +R + + D + E+ + N + E+A L+ Q EEE + + E
Sbjct: 167 LEKQRATQRYIKEFKTKRDEWKAREQELMEEENRRILEFARLQQQREEERMEKKKEQEEA 226
Query: 185 IDTVKTFLRNSM-STAEQRD 241
+ TV+ L + E+RD
Sbjct: 227 MATVQQKLSERIRKEEEERD 246
>SB_9641| Best HMM Match : MAT1 (HMM E-Value=0.47)
Length = 642
Score = 26.6 bits (56), Expect = 3.9
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Frame = +2
Query: 53 LSDNVLLKIGEVAQRLNYYL-QEYANLEMQIEEEIKYMEIDDGEEIDTVKTFLRNSMST 226
+S +LL + + +R YL QE A + +E+E + +++ EEI K L + T
Sbjct: 370 ISKPLLLSVKQSRKRYELYLEQERAKTKSAVEQEKRKSTLEEIEEIKRKKRRLDSDTET 428
>SB_9193| Best HMM Match : FCH (HMM E-Value=1.6)
Length = 458
Score = 26.2 bits (55), Expect = 5.1
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -1
Query: 299 FFYIKYYLLNCLILMLTRTNHAVP 228
FFY+KY L CL +L+ + P
Sbjct: 289 FFYLKYLLFICLYAVLSEPQTSTP 312
>SB_46609| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 365
Score = 26.2 bits (55), Expect = 5.1
Identities = 11/47 (23%), Positives = 26/47 (55%)
Frame = -1
Query: 146 PQFAFPSLRILANNNLVVGRPRQFLIIHYPTINANELLCVLSSWHFL 6
P+ F +L+ + + NLV +P F+I P + + +++W+++
Sbjct: 148 PETLFSTLQGMGSENLVEHQPDTFVISQVPVVESVCYSFNVTAWNYI 194
>SB_21261| Best HMM Match : APSES (HMM E-Value=2.3)
Length = 342
Score = 26.2 bits (55), Expect = 5.1
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Frame = +2
Query: 53 LSDNVLLKIGEVAQRLNYYL-QEYANLEMQIEEEIKYMEIDDGEEIDTVKTFLRNSMST 226
+S +LL + + +R YL QE A + +E+E + +++ EEI K L + T
Sbjct: 230 ISKPLLLSVKQSRKRYELYLEQERAKTKSAVEQEKRKSTLEEIEEIKRKKRRLDSDNKT 288
>SB_5246| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 548
Score = 26.2 bits (55), Expect = 5.1
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +2
Query: 47 HLLSDNVLLKIGEVAQRLNYYLQEYANLEMQIEEEI 154
H+LS L + ++ +R NY ++ MQI+ EI
Sbjct: 19 HILSYQALEFLADLHRRFNYTRKQLLKKRMQIQSEI 54
>SB_42534| Best HMM Match : DUF699 (HMM E-Value=0)
Length = 739
Score = 25.8 bits (54), Expect = 6.7
Identities = 11/41 (26%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Frame = +2
Query: 80 GEVAQRLNYYLQEYA-NLEMQIEEEIKYMEIDDGEEIDTVK 199
GE+ ++ + +++ A +L +EE K ME+ +E++ +K
Sbjct: 433 GEIVKQKDVHMEPLAKSLNQDLEEAAKEMEVKQKKELEKLK 473
>SB_45044| Best HMM Match : Thioredoxin (HMM E-Value=1.1)
Length = 213
Score = 25.4 bits (53), Expect = 8.9
Identities = 9/32 (28%), Positives = 20/32 (62%)
Frame = +2
Query: 104 YYLQEYANLEMQIEEEIKYMEIDDGEEIDTVK 199
YY + + + +++ +K +++DDG E+D K
Sbjct: 83 YYYGKVSEIVRSMKQVLKKLKMDDGLEVDEEK 114
>SB_17247| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 190
Score = 25.4 bits (53), Expect = 8.9
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = +2
Query: 74 KIGEVAQRLNYYLQEYANLEMQIEEEIKYMEIDDGEEIDT 193
KI EV ++LN L+E NL+M ++ +E EI++
Sbjct: 64 KIDEVLRKLNELLKEIDNLDMVDMNKLDELEKKLDNEIES 103
>SB_9417| Best HMM Match : FragX_IP (HMM E-Value=0)
Length = 875
Score = 25.4 bits (53), Expect = 8.9
Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Frame = +2
Query: 143 EEEIKYMEID-DGEEIDTVKTFLRNS 217
E+ K M D D E ID ++TFL+NS
Sbjct: 371 EKGAKKMRKDLDKEHIDAIETFLKNS 396
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,369,820
Number of Sequences: 59808
Number of extensions: 138649
Number of successful extensions: 397
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 387
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 397
length of database: 16,821,457
effective HSP length: 71
effective length of database: 12,575,089
effective search space used: 364677581
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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