Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc2b03
         (728 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    27   0.21 
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    24   1.4  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    24   1.4  
EF222292-1|ABN79652.1|  354|Tribolium castaneum cardioactive pep...    23   2.5  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10
           protein.
          Length = 2700

 Score = 26.6 bits (56), Expect = 0.21
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +3

Query: 291 AARH-PDIAARLRQRPATWARKRRPSSNDATDDFGDNFSGF 410
           A  H PD+ A  R+ P   A ++RP  ++  DD+  +F  F
Sbjct: 66  AVEHIPDLIADSRRLPLRDAVEKRPPPDEPIDDYEPSFDLF 106


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
            protein.
          Length = 1464

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +2

Query: 23   LLQLVEDGLAVSTDLFYHCSAG*LII 100
            +LQ+ +DG    + LF+ C A   II
Sbjct: 965  MLQISQDGPLAPSSLFFFCMAAEFII 990


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase CHS2
            protein.
          Length = 1464

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +2

Query: 23   LLQLVEDGLAVSTDLFYHCSAG*LII 100
            +LQ+ +DG    + LF+ C A   II
Sbjct: 965  MLQISQDGPLAPSSLFFFCMAAEFII 990


>EF222292-1|ABN79652.1|  354|Tribolium castaneum cardioactive
           peptide receptor 2 protein.
          Length = 354

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 9/28 (32%), Positives = 13/28 (46%)
 Frame = +1

Query: 517 PLRQLNHSNKRPPHRLNRPRRTANTSSK 600
           P+RQ +    RPP   +    T   SS+
Sbjct: 247 PIRQCDDHRDRPPRHFHEEHDTRRASSR 274


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 127,370
Number of Sequences: 336
Number of extensions: 2039
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19467635
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)