Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc2b03
         (728 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC28F2.09 |||transcription factor TFIIA complex large subunit ...    28   1.2  
SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr 2|||Ma...    26   4.8  
SPAC29B12.10c |||OPT oligopeptide transporter family|Schizosacch...    26   6.3  
SPCPB16A4.04c |trm8||tRNA |Schizosaccharomyces pombe|chr 3|||Manual    26   6.3  
SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity fac...    25   8.4  
SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces pom...    25   8.4  

>SPBC28F2.09 |||transcription factor TFIIA complex large subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 369

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 21/81 (25%), Positives = 34/81 (41%)
 Frame = -3

Query: 261 PPQTETPSQKQAVKGHSGTLVL*QAGINPRNFFLLKAFHSRTLKSQKNQSLNSTIINYPA 82
           PP    P     +   S  +   Q+  NP N     ++ S +L+   NQ+ +S IIN  +
Sbjct: 121 PPTPSLPQSATNISFDSSAIPNVQS--NPNNTAPFPSYSSNSLQLPTNQTADSPIINDHS 178

Query: 81  LQ**NRSVDTASPSSTSCNKF 19
                 +    +P S+S N F
Sbjct: 179 TANVTSTGQEHAPDSSSTNSF 199


>SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 918

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 11/39 (28%), Positives = 22/39 (56%)
 Frame = +3

Query: 18  KICCNSSKTGSRYLPICFITVVRDN*LLSNLVTDFFVTL 134
           ++  N + +  + LP+C I ++ +N L S    +F+V L
Sbjct: 458 RMSANMAPSVMKCLPVCLILILANNELHSPFPAEFYVLL 496


>SPAC29B12.10c |||OPT oligopeptide transporter
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 851

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +1

Query: 532 NHSNKRPPHRLNRPRRTANTSSKPRYHS 615
           NH N    H  NRP RT ++S  P  +S
Sbjct: 60  NHHNINIQHHPNRPFRTNSSSFSPNDYS 87


>SPCPB16A4.04c |trm8||tRNA |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 273

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 13/40 (32%), Positives = 17/40 (42%)
 Frame = +1

Query: 511 RRPLRQLNHSNKRPPHRLNRPRRTANTSSKPRYHSTDSET 630
           +R  RQ  H+N    H L  PR  +     P Y   D E+
Sbjct: 39  KRLFRQRAHANVLSDHELEYPRSPSEMDWSPYYPDFDVES 78


>SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity factor
           complex subunit, Fip1 homolog |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 344

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
 Frame = +1

Query: 445 SESTFRRTGTAGSALATNNHNSRRPLRQLNHSNKRP--PHRLNRPRRTANTSSK 600
           ++ T   T + G+  +TN +N+ RP     HS+  P    R   P R +N SS+
Sbjct: 281 AQPTHNPTSSYGNGASTN-YNASRPPSNHPHSSNYPSSSRRKPSPDRYSNYSSR 333


>SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 534

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +1

Query: 538 SNKRPPHRLNRPRRTANTSSKPRYHSTDSE 627
           S+ +P H LN    T      P Y+S+ SE
Sbjct: 222 SDMQPTHELNESPSTPTAPDFPHYNSSPSE 251


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,259,268
Number of Sequences: 5004
Number of extensions: 36796
Number of successful extensions: 127
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)