Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc2b03
         (728 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_07_0312 + 42677752-42678561,42678701-42678910,42679597-426797...    30   1.6  
01_05_0808 - 25414486-25414677,25415114-25415290,25415839-254159...    30   1.6  
10_01_0144 - 1705429-1706250                                           30   2.2  
06_01_0458 + 3269069-3269081,3269113-3269741                           29   3.8  
01_01_1145 + 9073973-9074281,9075440-9075998,9076088-9076241,907...    29   3.8  
03_03_0223 - 15570099-15570226,15572948-15573055,15573295-15573550     29   5.0  

>01_07_0312 +
           42677752-42678561,42678701-42678910,42679597-42679704,
           42679915-42680010,42680090-42680182,42680276-42680386,
           42680482-42680514,42680592-42680642,42680960-42681037,
           42681145-42681165
          Length = 536

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 16/36 (44%), Positives = 23/36 (63%)
 Frame = +1

Query: 490 ATNNHNSRRPLRQLNHSNKRPPHRLNRPRRTANTSS 597
           AT NH   RP +++  S ++PPH+L R +  A TSS
Sbjct: 35  ATENH---RP-KEIGPSGEKPPHKLLRAKGKAGTSS 66


>01_05_0808 -
           25414486-25414677,25415114-25415290,25415839-25415928,
           25416016-25416081,25416170-25416240,25416375-25416450,
           25416567-25420098,25421464-25421834
          Length = 1524

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
 Frame = +3

Query: 351 KRRPSSNDATDDFGDNFSGFDRF--PFDDIPPEFREHF 458
           +R+ SS DA   +GD F G  +F   FD +P ++ E F
Sbjct: 20  RRKASSTDAAAAYGDVFGGPPQFAVAFDGVPADYGEVF 57


>10_01_0144 - 1705429-1706250
          Length = 273

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 17/54 (31%), Positives = 25/54 (46%)
 Frame = +1

Query: 439 PSSESTFRRTGTAGSALATNNHNSRRPLRQLNHSNKRPPHRLNRPRRTANTSSK 600
           PS      R+G +G+  A +   +RR L Q  H  +RP      P R   TS++
Sbjct: 107 PSPLPRVARSGQSGAGRAPHQRRTRRQLGQSWHRRRRPTVADAAPARAVATSTE 160


>06_01_0458 + 3269069-3269081,3269113-3269741
          Length = 213

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 19/47 (40%), Positives = 21/47 (44%)
 Frame = +1

Query: 436 LPSSESTFRRTGTAGSALATNNHNSRRPLRQLNHSNKRPPHRLNRPR 576
           LPS  S  RRTG     +A   H   + L  L   N  P HR  RPR
Sbjct: 31  LPSHVSAVRRTG---EQVAVRCHVRTKGLVMLPRRNTPPRHRERRPR 74


>01_01_1145 +
           9073973-9074281,9075440-9075998,9076088-9076241,
           9077475-9077565,9077722-9077793,9077879-9078390,
           9078854-9078923,9079514-9079579,9080266-9080570,
           9080872-9081006,9081141-9081204,9081429-9081574,
           9081669-9081773,9082310-9082490
          Length = 922

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = -3

Query: 288 ARSTRPSLPPPQTETPSQKQAVKGH 214
           A++ +PS PPPQ++ P++     GH
Sbjct: 90  AQAQQPSPPPPQSQAPNRTHKFDGH 114


>03_03_0223 - 15570099-15570226,15572948-15573055,15573295-15573550
          Length = 163

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -3

Query: 273 PSLPPPQTETPSQKQAVKGHSGTLVL*QAGINP 175
           PSLPPPQ   P  +  +  H   LV+   G+ P
Sbjct: 74  PSLPPPQLADPRTRLLLPLHEDDLVVELPGLEP 106


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,666,729
Number of Sequences: 37544
Number of extensions: 264890
Number of successful extensions: 1009
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 980
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1009
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)