Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc2b03
(728 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC040232-1|AAH40232.1| 696|Homo sapiens CCDC88B protein protein. 33 1.4
BC030194-1|AAH30194.1| 223|Homo sapiens CCDC88B protein protein. 33 1.4
BC017359-1|AAH17359.1| 394|Homo sapiens SFRS11 protein protein. 32 1.8
AL353771-4|CAI22333.1| 389|Homo sapiens splicing factor, argini... 32 1.8
AL450998-13|CAH70861.1| 373|Homo sapiens SMART/HDAC1 associated... 30 7.4
AL450998-10|CAH70858.1| 3664|Homo sapiens SMART/HDAC1 associated... 30 7.4
AL034555-5|CAI19527.1| 373|Homo sapiens SMART/HDAC1 associated ... 30 7.4
AL034555-4|CAI19526.1| 3664|Homo sapiens SMART/HDAC1 associated ... 30 7.4
AF356524-1|AAK52750.1| 3664|Homo sapiens nuclear receptor transc... 30 7.4
>BC040232-1|AAH40232.1| 696|Homo sapiens CCDC88B protein protein.
Length = 696
Score = 32.7 bits (71), Expect = 1.4
Identities = 20/58 (34%), Positives = 28/58 (48%)
Frame = +1
Query: 505 NSRRPLRQLNHSNKRPPHRLNRPRRTANTSSKPRYHSTDSETQ*T*GRRVPPTRAWSM 678
+ R PLR ++ + P R R R N P H + S+T T G V P+R WS+
Sbjct: 529 DGRTPLRPCRNTKQMPTERALRYRNRRNV---PSPHPSASDTVGTAGLGVQPSRHWSV 583
>BC030194-1|AAH30194.1| 223|Homo sapiens CCDC88B protein protein.
Length = 223
Score = 32.7 bits (71), Expect = 1.4
Identities = 20/58 (34%), Positives = 28/58 (48%)
Frame = +1
Query: 505 NSRRPLRQLNHSNKRPPHRLNRPRRTANTSSKPRYHSTDSETQ*T*GRRVPPTRAWSM 678
+ R PLR ++ + P R R R N P H + S+T T G V P+R WS+
Sbjct: 56 DGRTPLRPCRNTKQMPTERALRYRNRRNV---PSPHPSASDTVGTAGLGVQPSRHWSV 110
>BC017359-1|AAH17359.1| 394|Homo sapiens SFRS11 protein protein.
Length = 394
Score = 32.3 bits (70), Expect = 1.8
Identities = 19/63 (30%), Positives = 30/63 (47%)
Frame = +1
Query: 439 PSSESTFRRTGTAGSALATNNHNSRRPLRQLNHSNKRPPHRLNRPRRTANTSSKPRYHST 618
P S ST RR+ +A S ++ RR + + S R P + P+R + S PR H
Sbjct: 327 PKSYSTARRSRSASSLHICDSRERRR---RRSRSGTRSPKKPRSPKRKLSRSPSPRRHKK 383
Query: 619 DSE 627
+ +
Sbjct: 384 EKK 386
>AL353771-4|CAI22333.1| 389|Homo sapiens splicing factor,
arginine/serine-rich 11 protein.
Length = 389
Score = 32.3 bits (70), Expect = 1.8
Identities = 19/63 (30%), Positives = 30/63 (47%)
Frame = +1
Query: 439 PSSESTFRRTGTAGSALATNNHNSRRPLRQLNHSNKRPPHRLNRPRRTANTSSKPRYHST 618
P S ST RR+ +A S ++ RR + + S R P + P+R + S PR H
Sbjct: 327 PKSYSTARRSRSASSLHICDSRERRR---RRSRSGTRSPKKPRSPKRKLSRSPSPRRHKK 383
Query: 619 DSE 627
+ +
Sbjct: 384 EKK 386
>AL450998-13|CAH70861.1| 373|Homo sapiens SMART/HDAC1 associated
repressor protein (SHARP) protein.
Length = 373
Score = 30.3 bits (65), Expect = 7.4
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 4/41 (9%)
Frame = +1
Query: 493 TNNHNSRRPLRQLNHSNKRPPH----RLNRPRRTANTSSKP 603
T RRP R HS R PH R P+R A+ +S+P
Sbjct: 184 TREVRGRRPERNYQHSRSRSPHSSQSRNQSPQRLASQASRP 224
>AL450998-10|CAH70858.1| 3664|Homo sapiens SMART/HDAC1 associated
repressor protein (SHARP) protein.
Length = 3664
Score = 30.3 bits (65), Expect = 7.4
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 4/41 (9%)
Frame = +1
Query: 493 TNNHNSRRPLRQLNHSNKRPPH----RLNRPRRTANTSSKP 603
T RRP R HS R PH R P+R A+ +S+P
Sbjct: 225 TREVRGRRPERNYQHSRSRSPHSSQSRNQSPQRLASQASRP 265
>AL034555-5|CAI19527.1| 373|Homo sapiens SMART/HDAC1 associated
repressor protein (SHARP) protein.
Length = 373
Score = 30.3 bits (65), Expect = 7.4
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 4/41 (9%)
Frame = +1
Query: 493 TNNHNSRRPLRQLNHSNKRPPH----RLNRPRRTANTSSKP 603
T RRP R HS R PH R P+R A+ +S+P
Sbjct: 184 TREVRGRRPERNYQHSRSRSPHSSQSRNQSPQRLASQASRP 224
>AL034555-4|CAI19526.1| 3664|Homo sapiens SMART/HDAC1 associated
repressor protein (SHARP) protein.
Length = 3664
Score = 30.3 bits (65), Expect = 7.4
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 4/41 (9%)
Frame = +1
Query: 493 TNNHNSRRPLRQLNHSNKRPPH----RLNRPRRTANTSSKP 603
T RRP R HS R PH R P+R A+ +S+P
Sbjct: 225 TREVRGRRPERNYQHSRSRSPHSSQSRNQSPQRLASQASRP 265
>AF356524-1|AAK52750.1| 3664|Homo sapiens nuclear receptor
transcription cofactor protein.
Length = 3664
Score = 30.3 bits (65), Expect = 7.4
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 4/41 (9%)
Frame = +1
Query: 493 TNNHNSRRPLRQLNHSNKRPPH----RLNRPRRTANTSSKP 603
T RRP R HS R PH R P+R A+ +S+P
Sbjct: 225 TREVRGRRPERNYQHSRSRSPHSSQSRNQSPQRLASQASRP 265
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 79,943,679
Number of Sequences: 237096
Number of extensions: 1352368
Number of successful extensions: 4058
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3898
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4058
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8623170556
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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