Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc2b03
         (728 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY059435-1|AAL13341.1|  609|Drosophila melanogaster GH02003p pro...    35   0.099
AE014296-2294|AAF49806.1|  516|Drosophila melanogaster CG32130-P...    35   0.099
AE014296-2293|AAF49808.1|  516|Drosophila melanogaster CG32130-P...    35   0.099
AE014296-2292|AAF49807.1|  542|Drosophila melanogaster CG32130-P...    35   0.099
AE014296-2291|AAF49809.2|  609|Drosophila melanogaster CG32130-P...    35   0.099
AE014296-3057|AAN11668.1| 2133|Drosophila melanogaster CG14073-P...    33   0.40 
AE014297-4823|AAF57207.1| 1844|Drosophila melanogaster CG1976-PA...    29   8.6  

>AY059435-1|AAL13341.1|  609|Drosophila melanogaster GH02003p
           protein.
          Length = 609

 Score = 35.1 bits (77), Expect = 0.099
 Identities = 20/39 (51%), Positives = 25/39 (64%)
 Frame = +3

Query: 600 TQIPQYGLRNTVDLGQKSPADPSLVDADDRTHRSMSAPP 716
           T + Q+GLRNTVD+G KS A+       D+  RS SAPP
Sbjct: 250 TNLNQHGLRNTVDMGVKSVAE------QDQGLRSHSAPP 282


>AE014296-2294|AAF49806.1|  516|Drosophila melanogaster CG32130-PD,
           isoform D protein.
          Length = 516

 Score = 35.1 bits (77), Expect = 0.099
 Identities = 20/39 (51%), Positives = 25/39 (64%)
 Frame = +3

Query: 600 TQIPQYGLRNTVDLGQKSPADPSLVDADDRTHRSMSAPP 716
           T + Q+GLRNTVD+G KS A+       D+  RS SAPP
Sbjct: 157 TNLNQHGLRNTVDMGVKSVAE------QDQGLRSHSAPP 189


>AE014296-2293|AAF49808.1|  516|Drosophila melanogaster CG32130-PB,
           isoform B protein.
          Length = 516

 Score = 35.1 bits (77), Expect = 0.099
 Identities = 20/39 (51%), Positives = 25/39 (64%)
 Frame = +3

Query: 600 TQIPQYGLRNTVDLGQKSPADPSLVDADDRTHRSMSAPP 716
           T + Q+GLRNTVD+G KS A+       D+  RS SAPP
Sbjct: 157 TNLNQHGLRNTVDMGVKSVAE------QDQGLRSHSAPP 189


>AE014296-2292|AAF49807.1|  542|Drosophila melanogaster CG32130-PC,
           isoform C protein.
          Length = 542

 Score = 35.1 bits (77), Expect = 0.099
 Identities = 20/39 (51%), Positives = 25/39 (64%)
 Frame = +3

Query: 600 TQIPQYGLRNTVDLGQKSPADPSLVDADDRTHRSMSAPP 716
           T + Q+GLRNTVD+G KS A+       D+  RS SAPP
Sbjct: 183 TNLNQHGLRNTVDMGVKSVAE------QDQGLRSHSAPP 215


>AE014296-2291|AAF49809.2|  609|Drosophila melanogaster CG32130-PA,
           isoform A protein.
          Length = 609

 Score = 35.1 bits (77), Expect = 0.099
 Identities = 20/39 (51%), Positives = 25/39 (64%)
 Frame = +3

Query: 600 TQIPQYGLRNTVDLGQKSPADPSLVDADDRTHRSMSAPP 716
           T + Q+GLRNTVD+G KS A+       D+  RS SAPP
Sbjct: 250 TNLNQHGLRNTVDMGVKSVAE------QDQGLRSHSAPP 282


>AE014296-3057|AAN11668.1| 2133|Drosophila melanogaster CG14073-PB,
           isoform B protein.
          Length = 2133

 Score = 33.1 bits (72), Expect = 0.40
 Identities = 18/63 (28%), Positives = 32/63 (50%)
 Frame = -3

Query: 291 LARSTRPSLPPPQTETPSQKQAVKGHSGTLVL*QAGINPRNFFLLKAFHSRTLKSQKNQS 112
           ++RST+P LPPP   + +Q     G SG+    Q   + +N  + K      + S K+Q+
Sbjct: 122 MSRSTQPGLPPPHPHSSAQGSGAAGTSGSDPHMQYYTSNQNLAIKKMSDPHPMWSYKSQA 181

Query: 111 LNS 103
           + +
Sbjct: 182 VTT 184


>AE014297-4823|AAF57207.1| 1844|Drosophila melanogaster CG1976-PA
           protein.
          Length = 1844

 Score = 28.7 bits (61), Expect = 8.6
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +3

Query: 585 EHEQQTQIPQYGLRNTVDLGQKSPADPSLVDADD 686
           E++  T  P++ +R   DL Q+  A PS+  AD+
Sbjct: 579 ENDGNTSAPEFDVRRGRDLRQRITASPSIFTADE 612


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,923,773
Number of Sequences: 53049
Number of extensions: 444928
Number of successful extensions: 1907
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1775
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1902
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3273062859
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)