Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc2b03
(728 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical pr... 29 2.6
Z81135-4|CAB03457.1| 500|Caenorhabditis elegans Hypothetical pr... 29 4.5
AL032634-4|CAA21599.1| 500|Caenorhabditis elegans Hypothetical ... 29 4.5
AL032627-7|CAD56256.1| 306|Caenorhabditis elegans Hypothetical ... 29 4.5
AL032627-6|CAD56255.1| 331|Caenorhabditis elegans Hypothetical ... 29 4.5
AL032627-5|CAD45607.2| 314|Caenorhabditis elegans Hypothetical ... 29 4.5
AL032627-4|CAB54382.2| 327|Caenorhabditis elegans Hypothetical ... 29 4.5
AL032627-3|CAB54381.2| 325|Caenorhabditis elegans Hypothetical ... 29 4.5
AB081596-1|BAC19843.1| 325|Caenorhabditis elegans cyclic AMP-re... 29 4.5
AB081595-1|BAC19842.1| 306|Caenorhabditis elegans cyclic AMP-re... 29 4.5
AC024211-5|AAF36063.2| 1119|Caenorhabditis elegans Hypothetical ... 28 5.9
>Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical
protein T24B8.4 protein.
Length = 866
Score = 29.5 bits (63), Expect = 2.6
Identities = 16/62 (25%), Positives = 27/62 (43%)
Frame = +1
Query: 439 PSSESTFRRTGTAGSALATNNHNSRRPLRQLNHSNKRPPHRLNRPRRTANTSSKPRYHST 618
P S + R L +N ++P + S+ PP L+ + ++SS PR+H
Sbjct: 729 PMSGTVADRANKFRQQLQADNEKGKKPWQHPFMSSNVPPSSLSAREQLFSSSSLPRHHRN 788
Query: 619 DS 624
S
Sbjct: 789 SS 790
>Z81135-4|CAB03457.1| 500|Caenorhabditis elegans Hypothetical
protein W01G7.5 protein.
Length = 500
Score = 28.7 bits (61), Expect = 4.5
Identities = 18/59 (30%), Positives = 30/59 (50%)
Frame = +1
Query: 442 SSESTFRRTGTAGSALATNNHNSRRPLRQLNHSNKRPPHRLNRPRRTANTSSKPRYHST 618
S +S+FR + S++ S P ++L+ K P N PR T ++SSK ++T
Sbjct: 127 SKQSSFRSANSTASSVGRGRPVSSTPNKRLSPVYKPSPVPKNTPRTT-SSSSKTTINTT 184
>AL032634-4|CAA21599.1| 500|Caenorhabditis elegans Hypothetical
protein W01G7.5 protein.
Length = 500
Score = 28.7 bits (61), Expect = 4.5
Identities = 18/59 (30%), Positives = 30/59 (50%)
Frame = +1
Query: 442 SSESTFRRTGTAGSALATNNHNSRRPLRQLNHSNKRPPHRLNRPRRTANTSSKPRYHST 618
S +S+FR + S++ S P ++L+ K P N PR T ++SSK ++T
Sbjct: 127 SKQSSFRSANSTASSVGRGRPVSSTPNKRLSPVYKPSPVPKNTPRTT-SSSSKTTINTT 184
>AL032627-7|CAD56256.1| 306|Caenorhabditis elegans Hypothetical
protein Y41C4A.4e protein.
Length = 306
Score = 28.7 bits (61), Expect = 4.5
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = -3
Query: 270 SLPPPQTETPSQKQAVKGHSGTLVL*QAGINP 175
S+ PP + TPSQ+Q+V+ GT L + + P
Sbjct: 161 SVQPPTSSTPSQQQSVQSLEGTSGLIGSAMKP 192
>AL032627-6|CAD56255.1| 331|Caenorhabditis elegans Hypothetical
protein Y41C4A.4d protein.
Length = 331
Score = 28.7 bits (61), Expect = 4.5
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = -3
Query: 270 SLPPPQTETPSQKQAVKGHSGTLVL*QAGINP 175
S+ PP + TPSQ+Q+V+ GT L + + P
Sbjct: 186 SVQPPTSSTPSQQQSVQSLEGTSGLIGSAMKP 217
>AL032627-5|CAD45607.2| 314|Caenorhabditis elegans Hypothetical
protein Y41C4A.4c protein.
Length = 314
Score = 28.7 bits (61), Expect = 4.5
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = -3
Query: 270 SLPPPQTETPSQKQAVKGHSGTLVL*QAGINP 175
S+ PP + TPSQ+Q+V+ GT L + + P
Sbjct: 169 SVQPPTSSTPSQQQSVQSLEGTSGLIGSAMKP 200
>AL032627-4|CAB54382.2| 327|Caenorhabditis elegans Hypothetical
protein Y41C4A.4b protein.
Length = 327
Score = 28.7 bits (61), Expect = 4.5
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = -3
Query: 270 SLPPPQTETPSQKQAVKGHSGTLVL*QAGINP 175
S+ PP + TPSQ+Q+V+ GT L + + P
Sbjct: 182 SVQPPTSSTPSQQQSVQSLEGTSGLIGSAMKP 213
>AL032627-3|CAB54381.2| 325|Caenorhabditis elegans Hypothetical
protein Y41C4A.4a protein.
Length = 325
Score = 28.7 bits (61), Expect = 4.5
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = -3
Query: 270 SLPPPQTETPSQKQAVKGHSGTLVL*QAGINP 175
S+ PP + TPSQ+Q+V+ GT L + + P
Sbjct: 180 SVQPPTSSTPSQQQSVQSLEGTSGLIGSAMKP 211
>AB081596-1|BAC19843.1| 325|Caenorhabditis elegans cyclic
AMP-response element bindingprotein 1 gamma 2 protein.
Length = 325
Score = 28.7 bits (61), Expect = 4.5
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = -3
Query: 270 SLPPPQTETPSQKQAVKGHSGTLVL*QAGINP 175
S+ PP + TPSQ+Q+V+ GT L + + P
Sbjct: 180 SVQPPTSSTPSQQQSVQSLEGTSGLIGSAMKP 211
>AB081595-1|BAC19842.1| 306|Caenorhabditis elegans cyclic
AMP-response element bindingprotein 1 beta protein.
Length = 306
Score = 28.7 bits (61), Expect = 4.5
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = -3
Query: 270 SLPPPQTETPSQKQAVKGHSGTLVL*QAGINP 175
S+ PP + TPSQ+Q+V+ GT L + + P
Sbjct: 161 SVQPPTSSTPSQQQSVQSLEGTSGLIGSAMKP 192
>AC024211-5|AAF36063.2| 1119|Caenorhabditis elegans Hypothetical
protein Y76B12C.2 protein.
Length = 1119
Score = 28.3 bits (60), Expect = 5.9
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = +1
Query: 553 PHRLNRPRRTANTSSKPRYHSTDSETQ 633
P+R++RPRR+ T+ K Y +D + +
Sbjct: 207 PNRISRPRRSVTTAKKVSYVPSDDQLE 233
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,808,749
Number of Sequences: 27780
Number of extensions: 212734
Number of successful extensions: 748
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 707
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 747
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1718929214
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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