Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc2b02
(586 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC6B1.04 |mde4||monopolin-like complex subunit Mde4|Schizosacc... 29 0.66
SPBC4C3.12 |sep1||fork head transcription factor Sep1|Schizosacc... 29 0.66
SPAPB17E12.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1... 28 0.87
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch... 27 1.5
SPAC17G8.13c |mst2||histone acetyltransferase Mst2|Schizosacchar... 26 4.7
SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak... 26 4.7
SPBC354.05c |sre2||membrane-tethered transcription factor |Schiz... 25 6.2
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch... 25 6.2
SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual 25 8.1
>SPBC6B1.04 |mde4||monopolin-like complex subunit
Mde4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 421
Score = 28.7 bits (61), Expect = 0.66
Identities = 25/105 (23%), Positives = 53/105 (50%), Gaps = 4/105 (3%)
Frame = +1
Query: 133 NLELRPSS*SDYCTLIMSKRVREMSVVSDETAKRIRQNEHYHAKNESFLGFCNLEEIDYY 312
NL L +S + +SK + ++ ++ ++ + + +S L NL+EI +
Sbjct: 14 NLGLSVTSRRNQILFYLSKALNLAHLLRSDSLQKSFLDALKQSATDSELLHKNLDEIKFL 73
Query: 313 QCLKM--QYVLDQ--NFDNDFILTVYRMANVVTKQVRPYNSIDEK 435
Q K+ + +L+Q N ND+ L V R+ + ++ V+ NS++ +
Sbjct: 74 QNEKLNNEKLLEQEQNEANDYRLKVERLEHKISDYVQEINSLNSQ 118
>SPBC4C3.12 |sep1||fork head transcription factor
Sep1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 663
Score = 28.7 bits (61), Expect = 0.66
Identities = 12/45 (26%), Positives = 22/45 (48%)
Frame = -2
Query: 312 IIINFFQVAKPQKRFIFGMIVFVLSNAFGRFIRNNRHFTNTFRHN 178
++I + P +R I +SN F + ++N + N+ RHN
Sbjct: 135 MLIGMSIIRSPDRRLTLSAIYDWISNTFSFYNKSNNGWQNSIRHN 179
>SPAPB17E12.09 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 203
Score = 28.3 bits (60), Expect = 0.87
Identities = 14/46 (30%), Positives = 27/46 (58%)
Frame = +1
Query: 217 DETAKRIRQNEHYHAKNESFLGFCNLEEIDYYQCLKMQYVLDQNFD 354
D + + QN Y+ + E+ N+E++DYY+ L+ ++D+N D
Sbjct: 28 DSQSDPLNQNL-YNIETENVKDL-NIEDVDYYEKLQNFKIVDENID 71
>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
Mok13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2358
Score = 27.5 bits (58), Expect = 1.5
Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
Frame = -3
Query: 578 FNGSYDSKSVFFFKFNTSS*YCFLTLLLSTKRAFFIKINTLRTVL*WCFSSILLYGLTC- 402
FNGS + +F K T CF+ + + + I ++ + + + +LL G +
Sbjct: 1900 FNGSSPNSFLFLLKNRTMRIKCFMQMRIGDWPVYSIFLSVGQILAATSYQLVLLSGSSAQ 1959
Query: 401 FVTTLAILYTVKIKSLSKFWSRTY 330
F T L I+ ++ S S FW Y
Sbjct: 1960 FSTQLYIVGSIYTVS-SVFWWYLY 1982
>SPAC17G8.13c |mst2||histone acetyltransferase
Mst2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 407
Score = 25.8 bits (54), Expect = 4.7
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +1
Query: 523 DDVLNLKKNTDLESYDPLKKK 585
DDV++ ++ + YDPLKKK
Sbjct: 318 DDVISTLESLSVFKYDPLKKK 338
>SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak10
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 708
Score = 25.8 bits (54), Expect = 4.7
Identities = 17/79 (21%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Frame = -1
Query: 337 ERIAFLN-IDNNQFLPSCKTPKKIHFWHDSVRFVECVWPFHPKQPTFHEHV*T*LVCNNR 161
E ++ LN + N + + + K + D+ +V+C + + E LVC+ +
Sbjct: 5 ESLSLLNSMQGNVKIGNVEPAKGNEGYVDNAGYVDCTKSYFEATKSLKEEQ---LVCDPK 61
Query: 160 FTMTDVVQDFNELYDKIEN 104
FT+ D + F + K+++
Sbjct: 62 FTLLDSISAFEIMEPKMDS 80
>SPBC354.05c |sre2||membrane-tethered transcription factor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 793
Score = 25.4 bits (53), Expect = 6.2
Identities = 8/21 (38%), Positives = 15/21 (71%)
Frame = -1
Query: 136 DFNELYDKIENKYKLKYTFDC 74
+FNE+++ ++Y LKY+ C
Sbjct: 604 NFNEMHNAYSSRYPLKYSKSC 624
>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1208
Score = 25.4 bits (53), Expect = 6.2
Identities = 13/40 (32%), Positives = 18/40 (45%)
Frame = -1
Query: 136 DFNELYDKIENKYKLKYTFDCATNNNERILFGAIQERKSY 17
D NE++D E L D T +R++ Q KSY
Sbjct: 518 DLNEIHDLREENEGLTLKIDSITKEKDRLINELEQRIKSY 557
>SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual
Length = 978
Score = 25.0 bits (52), Expect = 8.1
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = +3
Query: 45 KSIRSLLFVAQSKVYFNLYLFSILSYNSL 131
K S+LF +++VYF+ + SIL + +L
Sbjct: 821 KGFGSILFTEENQVYFDPLINSILHFANL 849
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,469,501
Number of Sequences: 5004
Number of extensions: 52598
Number of successful extensions: 171
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 252150250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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