Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc2b02
         (586 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1200 + 31690611-31690914,31690993-31691293,31691391-31696251     32   0.39 
12_02_0134 - 14071190-14071435,14071800-14071988,14072114-140721...    29   3.6  
02_05_0239 + 27101440-27101904                                         29   3.6  
11_02_0058 + 7879859-7879951,7880844-7881078,7881165-7881535,788...    28   6.3  
09_04_0639 - 19162501-19162878,19162974-19163126,19163366-191640...    28   6.3  
03_05_0974 + 29324025-29324117,29325064-29325298,29325385-293257...    28   6.3  
01_01_0793 - 6182125-6182625                                           28   6.3  
02_04_0595 - 24186714-24186898,24187004-24187150,24187647-241877...    27   8.3  

>04_04_1200 + 31690611-31690914,31690993-31691293,31691391-31696251
          Length = 1821

 Score = 31.9 bits (69), Expect = 0.39
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +1

Query: 253  YHAKNESFLGFCNLEEIDYYQCLKMQYVLDQNFDND 360
            ++   E F GF +LEE+   +CLK+   L  N  ND
Sbjct: 1264 FYGSKEDFAGFTSLEELVISRCLKLVSFLAHNDGND 1299


>12_02_0134 -
           14071190-14071435,14071800-14071988,14072114-14072194,
           14072261-14072404,14072528-14072761,14072836-14073981,
           14074863-14074922,14075178-14075420,14075509-14075607,
           14076196-14076367,14076597-14076735,14077514-14077624,
           14077695-14077797,14077885-14077962,14078054-14078122,
           14078203-14078275,14078891-14078975,14079473-14079536,
           14079963-14080073,14080139-14080213,14080306-14080398,
           14080982-14081056,14081172-14081261
          Length = 1259

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +1

Query: 4   ERNTNKTCVLE*PQKVYVHCCL 69
           ++N+N+ C L  P  + VHCCL
Sbjct: 637 KQNSNQKCRLSNPHALVVHCCL 658


>02_05_0239 + 27101440-27101904
          Length = 154

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -1

Query: 469 KSTRYAPCCNGAFRRYCYTV*LVLSPRWPFC 377
           ++ R  P C+ AF + C    L +SPR P C
Sbjct: 102 RAVRVLPGCSRAFHQDCVDRWLTISPRCPVC 132


>11_02_0058 +
           7879859-7879951,7880844-7881078,7881165-7881535,
           7881648-7882304
          Length = 451

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = +1

Query: 370 TVYRMANVVTKQVRPYNSIDEKHHYNTVRNVLILIKN 480
           TVY    V T  V PYNS+   H      +V +L+ N
Sbjct: 170 TVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDN 206


>09_04_0639 -
           19162501-19162878,19162974-19163126,19163366-19164046,
           19164747-19164856,19165050-19165125
          Length = 465

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 10/41 (24%), Positives = 21/41 (51%)
 Frame = +1

Query: 196 REMSVVSDETAKRIRQNEHYHAKNESFLGFCNLEEIDYYQC 318
           RE         ++I+++ H H K+ + +GFC+ + +    C
Sbjct: 348 RESKFRDSSHMRQIQEHRHEHLKSVTIIGFCSAKSLVELTC 388


>03_05_0974 +
           29324025-29324117,29325064-29325298,29325385-29325755,
           29325864-29326520
          Length = 451

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = +1

Query: 370 TVYRMANVVTKQVRPYNSIDEKHHYNTVRNVLILIKN 480
           TVY    V T  V PYNS+   H      +V +L+ N
Sbjct: 170 TVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDN 206


>01_01_0793 - 6182125-6182625
          Length = 166

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 12/31 (38%), Positives = 14/31 (45%)
 Frame = -1

Query: 469 KSTRYAPCCNGAFRRYCYTV*LVLSPRWPFC 377
           ++ R  PCC  AF   C    L L P  P C
Sbjct: 112 ETVRALPCCPHAFHARCVDAWLRLRPTCPLC 142


>02_04_0595 -
           24186714-24186898,24187004-24187150,24187647-24187718,
           24188061-24188204,24188769-24188840,24189233-24189304,
           24189805-24189876,24190214-24190285,24190416-24190487,
           24190685-24190756,24190957-24191031,24191226-24191372,
           24191670-24191877,24192240-24192368,24192454-24192663
          Length = 582

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 15/56 (26%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
 Frame = +1

Query: 163 DYCTLIMSKRVREMSVVSDETAKRIRQNEHYHAKN-ESFLGFCNLEEIDYYQCLKM 327
           +YC +I    +  +S +S+ T+   + ++   A+  E+F    NL  +D  +CLK+
Sbjct: 168 NYCDMISEHGLGILSGLSNLTSLSFKSSDGITAEAMEAFANLVNLVNLDLERCLKI 223


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,929,030
Number of Sequences: 37544
Number of extensions: 267930
Number of successful extensions: 613
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 596
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 611
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1376330256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)