Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc2b02
         (586 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18309| Best HMM Match : Exo_endo_phos (HMM E-Value=2.3e-09)         29   2.1  
SB_12291| Best HMM Match : Exo_endo_phos (HMM E-Value=1.8e-09)         29   2.1  
SB_52564| Best HMM Match : Exo_endo_phos (HMM E-Value=3.2e-09)         29   2.1  
SB_51419| Best HMM Match : DNA_ligase_A_C (HMM E-Value=8.6)            29   2.1  
SB_22071| Best HMM Match : Keratin_B2 (HMM E-Value=3.3)                29   2.1  
SB_11838| Best HMM Match : RVT_1 (HMM E-Value=0)                       29   2.1  
SB_151| Best HMM Match : zf-CCHC (HMM E-Value=8.9e-05)                 29   2.8  
SB_12450| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.7  
SB_57227| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.4  
SB_59350| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.4  
SB_15195| Best HMM Match : Ribosomal_L31 (HMM E-Value=5.4)             28   6.4  
SB_14831| Best HMM Match : DUF309 (HMM E-Value=9.4)                    28   6.4  
SB_58733| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.5  

>SB_18309| Best HMM Match : Exo_endo_phos (HMM E-Value=2.3e-09)
          Length = 895

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = +1

Query: 475 KNARLVLSNSVKKQYYDDVLNLKKNTDLESYDP 573
           K  R ++SNS+K+ + + V  + K  DLES +P
Sbjct: 540 KRLRNIVSNSIKESHNNYVSEIMKGIDLESDEP 572


>SB_12291| Best HMM Match : Exo_endo_phos (HMM E-Value=1.8e-09)
          Length = 843

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = +1

Query: 475 KNARLVLSNSVKKQYYDDVLNLKKNTDLESYDP 573
           K  R ++SNS+K+ + + V  + K  DLES +P
Sbjct: 385 KRLRNIVSNSIKESHNNYVSEIMKGIDLESDEP 417


>SB_52564| Best HMM Match : Exo_endo_phos (HMM E-Value=3.2e-09)
          Length = 748

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = +1

Query: 475 KNARLVLSNSVKKQYYDDVLNLKKNTDLESYDP 573
           K  R ++SNS+K+ + + V  + K  DLES +P
Sbjct: 453 KRLRNIVSNSIKESHNNYVSEIMKGIDLESDEP 485


>SB_51419| Best HMM Match : DNA_ligase_A_C (HMM E-Value=8.6)
          Length = 291

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = +1

Query: 475 KNARLVLSNSVKKQYYDDVLNLKKNTDLESYDP 573
           K  R ++SNS+K+ + + V  + K  DLES +P
Sbjct: 168 KRLRNIVSNSIKESHNNYVSEIMKGIDLESDEP 200


>SB_22071| Best HMM Match : Keratin_B2 (HMM E-Value=3.3)
          Length = 260

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 12/37 (32%), Positives = 23/37 (62%)
 Frame = +1

Query: 394 VTKQVRPYNSIDEKHHYNTVRNVLILIKNARLVLSNS 504
           V    RP+ S+    H N++++ L+L+   +LVLS++
Sbjct: 134 VPTSTRPHASMSPVPHVNSIQHQLVLVPTCQLVLSSN 170


>SB_11838| Best HMM Match : RVT_1 (HMM E-Value=0)
          Length = 1009

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = +1

Query: 475 KNARLVLSNSVKKQYYDDVLNLKKNTDLESYDP 573
           K  R ++SNS+K+ + + V  + K  DLES +P
Sbjct: 423 KRLRNIVSNSIKESHNNYVSEIMKGIDLESDEP 455


>SB_151| Best HMM Match : zf-CCHC (HMM E-Value=8.9e-05)
          Length = 1382

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 17/75 (22%), Positives = 34/75 (45%)
 Frame = +1

Query: 187 KRVREMSVVSDETAKRIRQNEHYHAKNESFLGFCNLEEIDYYQCLKMQYVLDQNFDNDFI 366
           KR+R+++     TAKR R+      K+  F   C +  + +Y+     +     ++ND  
Sbjct: 771 KRIRDLTTTDTTTAKRFRKELDQLRKD--FESACEIHSL-FYEFENPDHDALDAWENDLN 827

Query: 367 LTVYRMANVVTKQVR 411
             VY +   + K ++
Sbjct: 828 NVVYTLQEAIEKDIK 842


>SB_12450| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 333

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 4/41 (9%)
 Frame = -3

Query: 431 SSILLYGLTC--FVTTLAI--LYTVKIKSLSKFWSRTYCIF 321
           S ILL+ L    F+  +A+  +YT+ + S+ + W   YCIF
Sbjct: 14  SKILLFSLATSDFLVGIALQPMYTLHLMSMVRDWPSLYCIF 54


>SB_57227| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 712

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 15/48 (31%), Positives = 26/48 (54%)
 Frame = +1

Query: 109 QFYRTTR*NLELRPSS*SDYCTLIMSKRVREMSVVSDETAKRIRQNEH 252
           + Y  T  N +LR +  SDY     ++++ +M+ V DET+     +EH
Sbjct: 89  RLYSQTHPNFDLRETELSDYYRPSSNQKMGKMAYVGDETSFIHGVDEH 136


>SB_59350| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 987

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 22/93 (23%), Positives = 42/93 (45%), Gaps = 2/93 (2%)
 Frame = +1

Query: 310 YQCLKMQYVLDQNFDNDFILTVYRMANVVTKQVRPYNSIDEKHHYNTVRNVLILIKNARL 489
           Y  + M+  L Q+F N+  +      NVVT +    + I +   Y   +     ++ A++
Sbjct: 174 YSNVPMKARLHQHFGNEIAINSINNQNVVTFRETTASIISD--FYKKPKGDDSEVEKAKI 231

Query: 490 V--LSNSVKKQYYDDVLNLKKNTDLESYDPLKK 582
           +   +  +K Q Y     + + TD+ SY P K+
Sbjct: 232 IQTAARLIKMQKYGRSAAVHQGTDIPSYTPDKQ 264


>SB_15195| Best HMM Match : Ribosomal_L31 (HMM E-Value=5.4)
          Length = 287

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 22/93 (23%), Positives = 42/93 (45%), Gaps = 2/93 (2%)
 Frame = +1

Query: 310 YQCLKMQYVLDQNFDNDFILTVYRMANVVTKQVRPYNSIDEKHHYNTVRNVLILIKNARL 489
           Y  + M+  L Q+F N+  +      NVVT +    + I +   Y   +     ++ A++
Sbjct: 151 YSNVPMKARLHQHFGNEIAINSINNQNVVTFRETTASIISD--FYKKPKGDDSEVEKAKI 208

Query: 490 V--LSNSVKKQYYDDVLNLKKNTDLESYDPLKK 582
           +   +  +K Q Y     + + TD+ SY P K+
Sbjct: 209 IQTAARLIKMQKYGRSAAVHQGTDIPSYTPDKQ 241


>SB_14831| Best HMM Match : DUF309 (HMM E-Value=9.4)
          Length = 219

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 22/93 (23%), Positives = 42/93 (45%), Gaps = 2/93 (2%)
 Frame = +1

Query: 310 YQCLKMQYVLDQNFDNDFILTVYRMANVVTKQVRPYNSIDEKHHYNTVRNVLILIKNARL 489
           Y  + M+  L Q+F N+  +      NVVT +    + I +   Y   +     ++ A++
Sbjct: 106 YSNVHMKARLHQHFGNEIAINSINNQNVVTFRETTASIISD--FYKKPKGDDSEVEKAKI 163

Query: 490 V--LSNSVKKQYYDDVLNLKKNTDLESYDPLKK 582
           +   +  +K Q Y     + + TD+ SY P K+
Sbjct: 164 IQIAARLIKMQKYGRSAAVHQGTDIPSYTPDKQ 196


>SB_58733| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2060

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 15/55 (27%), Positives = 28/55 (50%)
 Frame = +1

Query: 421  SIDEKHHYNTVRNVLILIKNARLVLSNSVKKQYYDDVLNLKKNTDLESYDPLKKK 585
            ++  KH YNT      ++ + +L L     +  + DVLNL+K     +++P + K
Sbjct: 981  TVSLKHCYNT------MLTSQQLALIQRFHRYVFTDVLNLEKGESSLNFEPKENK 1029


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,734,082
Number of Sequences: 59808
Number of extensions: 362269
Number of successful extensions: 864
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 758
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 861
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1410146228
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)