Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc2b02
         (586 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    25   0.55 
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       24   1.3  
AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.    23   2.9  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              23   2.9  
D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         22   5.1  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    22   5.1  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    22   5.1  

>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 25.0 bits (52), Expect = 0.55
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +1

Query: 451 VRNVLILIKNARLVLSNSVKKQYYDDVLN 537
           +   +ILI +AR+   N   K+ YDD+L+
Sbjct: 2   ILQTIILILSARICHGNPDAKRLYDDLLS 30


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 12/38 (31%), Positives = 15/38 (39%)
 Frame = -2

Query: 291 VAKPQKRFIFGMIVFVLSNAFGRFIRNNRHFTNTFRHN 178
           +  P K+     I     N F  F RN   + N  RHN
Sbjct: 518 IESPDKQLTLNEIYNWFQNTFCYFRRNAATWKNAVRHN 555


>AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.
          Length = 355

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +1

Query: 253 YHAKNESFLGFCNLEEIDYYQCLKMQ 330
           YH  +++FL +CN  E D+ + + MQ
Sbjct: 210 YHNDDKTFLVWCN--EEDHLRIISMQ 233


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 10/49 (20%), Positives = 25/49 (51%)
 Frame = +1

Query: 388 NVVTKQVRPYNSIDEKHHYNTVRNVLILIKNARLVLSNSVKKQYYDDVL 534
           N++  +  P +       Y  +++ L+L  +ARL+  ++  K+Y   ++
Sbjct: 193 NLIPDKNDPDSKECSNQEYEIMKDNLLLYNHARLMSQDNHSKEYLVSIM 241


>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +1

Query: 391 VVTKQVRPYNSIDEKHHYNTVRNVLILIKNARLVLSNSV 507
           V T+Q R  +      HY  V+N+L    +A++V  + V
Sbjct: 278 VNTEQFRTSDYQQNDIHYEGVQNILDTQSSAKVVSKSGV 316


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +1

Query: 391 VVTKQVRPYNSIDEKHHYNTVRNVLILIKNARLVLSNSV 507
           V T+Q R  +      HY  V+N+L    +A++V  + V
Sbjct: 278 VNTEQFRTSDYQQNDIHYEGVQNILDTQSSAKVVSKSGV 316


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +1

Query: 391 VVTKQVRPYNSIDEKHHYNTVRNVLILIKNARLVLSNSV 507
           V T+Q R  +      HY  V+N+L    +A++V  + V
Sbjct: 278 VNTEQFRTSDYQQNDIHYEGVQNILDTQSSAKVVSKSGV 316


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,487
Number of Sequences: 438
Number of extensions: 3660
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16993167
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)