Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc2b01
         (427 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8597| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   1.6  
SB_11016| Best HMM Match : DUF726 (HMM E-Value=1.3e-08)                29   2.1  
SB_39225| Best HMM Match : NIF (HMM E-Value=0)                         28   2.8  
SB_19119| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.9  
SB_51397| Best HMM Match : CRF (HMM E-Value=5.3)                       27   6.5  
SB_17268| Best HMM Match : Ribosomal_L29 (HMM E-Value=1.7)             27   8.6  
SB_9641| Best HMM Match : MAT1 (HMM E-Value=0.47)                      27   8.6  

>SB_8597| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 632

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 20/71 (28%), Positives = 37/71 (52%)
 Frame = +2

Query: 41  RWHLLSDNVLLKIGEVAQRLNYYLQEYANLEMQIEEEIKYMEIDDGEEIDTVKTFLRNSM 220
           RWH+ +   +L    + Q  ++   EY +  +   EE + + I + + +D ++  L +S 
Sbjct: 295 RWHIDTMMKVLTTQSLVQVGSWCCGEYGDKLLVDIEEDEPLGITENDVLDVLECVLYSSH 354

Query: 221 STAEQRDLYAL 253
           ST+  RD YAL
Sbjct: 355 STSTTRD-YAL 364


>SB_11016| Best HMM Match : DUF726 (HMM E-Value=1.3e-08)
          Length = 442

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 13/43 (30%), Positives = 27/43 (62%)
 Frame = +2

Query: 86  VAQRLNYYLQEYANLEMQIEEEIKYMEIDDGEEIDTVKTFLRN 214
           +A+R++   +EY N+E +IE  +  + ++ GE  + V T L++
Sbjct: 74  IAERIDN-CEEYDNIESEIESAVSILILELGERANWVVTILKD 115


>SB_39225| Best HMM Match : NIF (HMM E-Value=0)
          Length = 1772

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 16/44 (36%), Positives = 25/44 (56%)
 Frame = +2

Query: 59  DNVLLKIGEVAQRLNYYLQEYANLEMQIEEEIKYMEIDDGEEID 190
           +N  +K+  + +    Y Q    ++ +IEEE K   ID+GEEID
Sbjct: 665 ENDHIKVDRLMELHFKYYQRVQEVDAKIEEE-KQELIDEGEEID 707


>SB_19119| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1151

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = +3

Query: 114  KNTQTWKCKLRKKLNIWKLMTAKKSTLSRLFCAIPCPRRNSV-ICTR 251
            K   +  C +  +++ W+ M  + ST ++L C I   RR+ V  C R
Sbjct: 937  KEKTSMLCAVSSEVDFWESMFKRYSTWTKLVCCIAWLRRSVVAFCYR 983


>SB_51397| Best HMM Match : CRF (HMM E-Value=5.3)
          Length = 79

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +3

Query: 120 TQTWKCKLRKKLNIWKLMTAKKSTLSRL 203
           T  +    +K+L IWK+ TAK  +LS L
Sbjct: 2   TPPYDLNKQKRLQIWKINTAKLPSLSEL 29


>SB_17268| Best HMM Match : Ribosomal_L29 (HMM E-Value=1.7)
          Length = 434

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
 Frame = +2

Query: 5   LKSARMIERTVTRWHLLSDNVLLKIGEVAQRLNYYLQEYANLEMQIEEEIKYMEIDDGEE 184
           L+  R  +R +  +    D    +  E+ +  N  + E+A L+ Q EEE    + +  E 
Sbjct: 167 LEKQRATQRYIKEFKTKRDEWKAREQELMEEENRRILEFARLQQQREEERMEKKKEQEEA 226

Query: 185 IDTVKTFLRNSM-STAEQRD 241
           + TV+  L   +    E+RD
Sbjct: 227 MATVQQKLSERIRKEEEERD 246


>SB_9641| Best HMM Match : MAT1 (HMM E-Value=0.47)
          Length = 642

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
 Frame = +2

Query: 53  LSDNVLLKIGEVAQRLNYYL-QEYANLEMQIEEEIKYMEIDDGEEIDTVKTFLRNSMST 226
           +S  +LL + +  +R   YL QE A  +  +E+E +   +++ EEI   K  L +   T
Sbjct: 370 ISKPLLLSVKQSRKRYELYLEQERAKTKSAVEQEKRKSTLEEIEEIKRKKRRLDSDTET 428


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,787,163
Number of Sequences: 59808
Number of extensions: 140100
Number of successful extensions: 349
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 339
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 349
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 814166562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)