Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc2b01
         (427 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81120-7|CAB03343.2|  274|Caenorhabditis elegans Hypothetical pr...    28   2.4  
Z68337-10|CAA92753.1|  647|Caenorhabditis elegans Hypothetical p...    27   5.6  
AL032641-8|CAA21650.1|  647|Caenorhabditis elegans Hypothetical ...    27   5.6  
Z66567-9|CAA91495.1| 1268|Caenorhabditis elegans Hypothetical pr...    26   9.8  
Z66562-7|CAA91467.1| 1268|Caenorhabditis elegans Hypothetical pr...    26   9.8  
X65055-1|CAA46191.1| 1254|Caenorhabditis elegans P-glycoprotein ...    26   9.8  
AY028167-1|AAK19023.1|  287|Caenorhabditis elegans EFL-2 protein.      26   9.8  
AL117203-17|CAN86629.1|  284|Caenorhabditis elegans Hypothetical...    26   9.8  

>Z81120-7|CAB03343.2|  274|Caenorhabditis elegans Hypothetical
           protein T12D8.3 protein.
          Length = 274

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +2

Query: 131 EMQIEEEIKYMEIDDGEEIDTVKTFLRNSMSTAEQRDLY 247
           +++ E E K+       +IDT++T LRN     E +D Y
Sbjct: 150 KLETETEKKWFAAMRVSDIDTMRTLLRNEPEIIEAKDQY 188


>Z68337-10|CAA92753.1|  647|Caenorhabditis elegans Hypothetical
           protein M7.5 protein.
          Length = 647

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +3

Query: 105 IICKNTQTWKCKLRKKLNIWKLMTAKKSTLSRL 203
           + C +T  W    +KKLN WKL    K   S+L
Sbjct: 8   VTCLDTGFWNEVNKKKLNDWKLDETPKCISSQL 40


>AL032641-8|CAA21650.1|  647|Caenorhabditis elegans Hypothetical
           protein M7.5 protein.
          Length = 647

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +3

Query: 105 IICKNTQTWKCKLRKKLNIWKLMTAKKSTLSRL 203
           + C +T  W    +KKLN WKL    K   S+L
Sbjct: 8   VTCLDTGFWNEVNKKKLNDWKLDETPKCISSQL 40


>Z66567-9|CAA91495.1| 1268|Caenorhabditis elegans Hypothetical
           protein ZK455.7 protein.
          Length = 1268

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 12/36 (33%), Positives = 24/36 (66%)
 Frame = +2

Query: 137 QIEEEIKYMEIDDGEEIDTVKTFLRNSMSTAEQRDL 244
           +IE   +   +DD E+  T ++F R+S+++ E+R+L
Sbjct: 615 EIERAKEDTTLDDEEDEKTHRSFHRDSVTSDEEREL 650


>Z66562-7|CAA91467.1| 1268|Caenorhabditis elegans Hypothetical
           protein ZK455.7 protein.
          Length = 1268

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 12/36 (33%), Positives = 24/36 (66%)
 Frame = +2

Query: 137 QIEEEIKYMEIDDGEEIDTVKTFLRNSMSTAEQRDL 244
           +IE   +   +DD E+  T ++F R+S+++ E+R+L
Sbjct: 615 EIERAKEDTTLDDEEDEKTHRSFHRDSVTSDEEREL 650


>X65055-1|CAA46191.1| 1254|Caenorhabditis elegans P-glycoprotein C
           protein.
          Length = 1254

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 12/36 (33%), Positives = 24/36 (66%)
 Frame = +2

Query: 137 QIEEEIKYMEIDDGEEIDTVKTFLRNSMSTAEQRDL 244
           +IE   +   +DD E+  T ++F R+S+++ E+R+L
Sbjct: 601 EIERAKEDTTLDDEEDEKTHRSFHRDSVTSDEEREL 636


>AY028167-1|AAK19023.1|  287|Caenorhabditis elegans EFL-2 protein.
          Length = 287

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = +2

Query: 83  EVAQRLNYYLQEYANLEMQIEEEIKYMEIDDGEEIDTVKTFLRNSMST 226
           E ++ L   L E       I    K++++++ EEIDT     RNS ++
Sbjct: 237 ETSEALRVTLAEMLTDPTTISSSPKHIKLEEPEEIDTEDLGARNSQNS 284


>AL117203-17|CAN86629.1|  284|Caenorhabditis elegans Hypothetical
           protein Y48C3A.17b protein.
          Length = 284

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = +2

Query: 83  EVAQRLNYYLQEYANLEMQIEEEIKYMEIDDGEEIDTVKTFLRNSMST 226
           E ++ L   L E       I    K++++++ EEIDT     RNS ++
Sbjct: 234 ETSEALRVTLAEMLTDPTTISSSPKHIKLEEPEEIDTEDLGARNSQNS 281


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,431,471
Number of Sequences: 27780
Number of extensions: 110436
Number of successful extensions: 403
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 398
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 403
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 703342068
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)