Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc2a23
         (794 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59042| Best HMM Match : No HMM Matches (HMM E-Value=.)             229   2e-60
SB_42516| Best HMM Match : EF1_GNE (HMM E-Value=3.3e-05)               64   2e-10
SB_52162| Best HMM Match : No HMM Matches (HMM E-Value=.)              55   8e-08
SB_15649| Best HMM Match : EF1_GNE (HMM E-Value=0.025)                 54   1e-07
SB_25408| Best HMM Match : ABC_tran (HMM E-Value=0)                    29   5.7  

>SB_59042| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 225

 Score =  229 bits (560), Expect = 2e-60
 Identities = 120/228 (52%), Positives = 145/228 (63%), Gaps = 6/228 (2%)
 Frame = +2

Query: 68  MAVGDVKTAQGLNDLNQYLAEKSYVSGYTPSQADVQVFEQVGKAPAANLPHVLRWYNQIA 247
           M  GD+K+  GL+ LN +L E+SY+ GY PSQAD  VFE +  AP A+LPH LRWYN I 
Sbjct: 1   MGFGDLKSQAGLSALNTFLTERSYIEGYVPSQADAVVFEALKSAPPASLPHALRWYNHIV 60

Query: 248 SYT------PAERKTWSQGTSPLXXXXXXXXXXXXXXXXXXXXVDLFGSGXXXXXXXXXX 409
           SY       P E+K+  +   P                     +DLFGS           
Sbjct: 61  SYGEGKQNFPGEKKS-VESFGPAGAASEQKPAPADDNDDDE--IDLFGSDDEEEEKEAAR 117

Query: 410 XXXXXLKAYADKKSKKPALIAKSSILLDVKPWDDETDMKEMENQVRTIEMEGLLWGASKL 589
                LKAY +KK+KK  +IAKS+I+LDVKPWDDETDM EME  VR+I+ +GLLWGASKL
Sbjct: 118 IRQERLKAYEEKKAKKKPVIAKSNIMLDVKPWDDETDMAEMEKLVRSIQADGLLWGASKL 177

Query: 590 VPVGYGINKLQIMCVIEDDKVSVDLLTEKIQEFEDFVQSVDIAAFNKI 733
           VP+ YGI KLQI  V+EDDK+S D L E+I +FEDFVQSVDIAAFNKI
Sbjct: 178 VPLAYGIKKLQITVVVEDDKISTDFLEEEICKFEDFVQSVDIAAFNKI 225


>SB_42516| Best HMM Match : EF1_GNE (HMM E-Value=3.3e-05)
          Length = 416

 Score = 63.7 bits (148), Expect = 2e-10
 Identities = 38/95 (40%), Positives = 53/95 (55%), Gaps = 4/95 (4%)
 Frame = +2

Query: 425 LKAYADKKSKKPALIAKSS---ILLDVKPWDDETDMKEMEN-QVRTIEMEGLLWGASKLV 592
           +KA+A K  +KPA   K       +D+   DDE + +E    + + +         +KLV
Sbjct: 60  IKAFAKKPEEKPAAAKKEDDDDSDIDLFGSDDEEEAEEARQLREKRLAEYNAKKATTKLV 119

Query: 593 PVGYGINKLQIMCVIEDDKVSVDLLTEKIQEFEDF 697
            + YG+ KLQI CVIED KVS D L +K+ EFEDF
Sbjct: 120 EIAYGLKKLQITCVIEDAKVSTDDLIDKLCEFEDF 154


>SB_52162| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 81

 Score = 54.8 bits (126), Expect = 8e-08
 Identities = 23/35 (65%), Positives = 25/35 (71%)
 Frame = +2

Query: 149 YTPSQADVQVFEQVGKAPAANLPHVLRWYNQIASY 253
           Y PSQAD  VFE +  AP A+LPH LRWYN I SY
Sbjct: 2   YVPSQADAVVFEALKSAPPASLPHALRWYNHIVSY 36


>SB_15649| Best HMM Match : EF1_GNE (HMM E-Value=0.025)
          Length = 301

 Score = 54.4 bits (125), Expect = 1e-07
 Identities = 25/38 (65%), Positives = 29/38 (76%)
 Frame = +2

Query: 584 KLVPVGYGINKLQIMCVIEDDKVSVDLLTEKIQEFEDF 697
           KLV + YG+ KLQI CVIED KVS D L +K+ EFEDF
Sbjct: 2   KLVEIAYGLKKLQITCVIEDAKVSTDDLIDKLCEFEDF 39


>SB_25408| Best HMM Match : ABC_tran (HMM E-Value=0)
          Length = 1636

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 15/33 (45%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
 Frame = +2

Query: 101 LNDLNQYLAEKSYVSGYTPSQADVQ-VFEQVGK 196
           +N L + L EKS+  GY+P+ +DVQ V + V K
Sbjct: 62  VNKLPKGLIEKSWNFGYSPNTSDVQTVMQNVAK 94


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,468,674
Number of Sequences: 59808
Number of extensions: 442403
Number of successful extensions: 964
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 911
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 963
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2191792647
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)