Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc2a22
         (441 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.        21   5.2  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    21   6.9  
AM292365-1|CAL23177.1|  313|Tribolium castaneum gustatory recept...    21   6.9  
AM292325-1|CAL23137.2|  309|Tribolium castaneum gustatory recept...    21   6.9  

>DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.
          Length = 414

 Score = 21.0 bits (42), Expect = 5.2
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -3

Query: 64  VSQACVSTYRDLVDDTGTPRP 2
           VS  CVS   +   +TG+ RP
Sbjct: 82  VSHGCVSKILNRYQETGSIRP 102


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 20.6 bits (41), Expect = 6.9
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -3

Query: 142 AQAPDLIECDPALGL 98
           A  PD   CDP++GL
Sbjct: 42  AVQPDPGSCDPSVGL 56


>AM292365-1|CAL23177.1|  313|Tribolium castaneum gustatory receptor
           candidate 44 protein.
          Length = 313

 Score = 20.6 bits (41), Expect = 6.9
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = -3

Query: 262 LNRLPCVTDQQCRDNCVISSAASELTCQDG 173
           L  L C   ++    C+I  A + LTC +G
Sbjct: 25  LGLLSCSFPKKKLVYCIIFGAIATLTCIEG 54


>AM292325-1|CAL23137.2|  309|Tribolium castaneum gustatory receptor
           candidate 4 protein.
          Length = 309

 Score = 20.6 bits (41), Expect = 6.9
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = -3

Query: 262 LNRLPCVTDQQCRDNCVISSAASELTCQDG 173
           L  L C   ++    C+I  A + LTC +G
Sbjct: 21  LGLLSCSFPKKKLVYCIIFGAIATLTCIEG 50


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 103,403
Number of Sequences: 336
Number of extensions: 2206
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used:  9880622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)