Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc2a21
         (180 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q0GYC3 Cluster: Putative uncharacterized protein; n=2; ...    75   4e-13
UniRef50_A7IDZ7 Cluster: Putative uncharacterized protein; n=1; ...    31   5.0  

>UniRef50_Q0GYC3 Cluster: Putative uncharacterized protein; n=2;
           Nucleopolyhedrovirus|Rep: Putative uncharacterized
           protein - Plutella xylostella multiple
           nucleopolyhedrovirus
          Length = 74

 Score = 74.5 bits (175), Expect = 4e-13
 Identities = 33/47 (70%), Positives = 34/47 (72%)
 Frame = -3

Query: 178 MCEVYPGGVCNPSFCVCV*YRLKNGAGVSNHMWHRLKNDDGDDKPCL 38
           MC VYPGGVCNPSFC CV          SNHMW+RLKN DGDDKPCL
Sbjct: 9   MCGVYPGGVCNPSFCACV----------SNHMWYRLKNGDGDDKPCL 45


>UniRef50_A7IDZ7 Cluster: Putative uncharacterized protein; n=1;
           Xanthobacter autotrophicus Py2|Rep: Putative
           uncharacterized protein - Xanthobacter sp. (strain Py2)
          Length = 469

 Score = 31.1 bits (67), Expect = 5.0
 Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
 Frame = +3

Query: 45  GLSSPSSFFNRCHIWFDTPAPFFSRYHT---QTQKLGLQTP 158
           GL +  SF  +C+IWFD  AP   R +     T +LG++ P
Sbjct: 389 GLVADWSFGGKCNIWFDYEAPDAPRLYKANYSTDELGVRDP 429


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.314    0.135    0.396 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,814,487
Number of Sequences: 1657284
Number of extensions: 2124791
Number of successful extensions: 3021
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2965
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3020
length of database: 575,637,011
effective HSP length: 39
effective length of database: 511,002,935
effective search space used: 10220058700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)