Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc2a21
         (180 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     19   3.5  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    19   3.5  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           19   3.5  
AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant transcrip...    19   3.5  
EF222289-1|ABN79649.1|   68|Tribolium castaneum adipokinetic hor...    19   4.6  
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    19   6.1  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    19   6.1  
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    19   6.1  

>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 19.4 bits (38), Expect = 3.5
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = +3

Query: 57  PSSFFNRCHIWFDTPAPFFSRYHTQTQKL 143
           PS  +N+ + +      FF  +H Q Q+L
Sbjct: 33  PSEEYNQ-NSYIPPGGDFFGNHHIQQQQL 60


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 19.4 bits (38), Expect = 3.5
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = +3

Query: 57  PSSFFNRCHIWFDTPAPFFSRYHTQTQKL 143
           PS  +N+ + +      FF  +H Q Q+L
Sbjct: 33  PSEEYNQ-NSYIPPGGDFFGNHHIQQQQL 60


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 19.4 bits (38), Expect = 3.5
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = +3

Query: 57  PSSFFNRCHIWFDTPAPFFSRYHTQTQKL 143
           PS  +N+ + +      FF  +H Q Q+L
Sbjct: 33  PSEEYNQ-NSYIPPGGDFFGNHHIQQQQL 60


>AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant
           transcription factor TcDfd1 protein.
          Length = 126

 Score = 19.4 bits (38), Expect = 3.5
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = +3

Query: 57  PSSFFNRCHIWFDTPAPFFSRYHTQTQKL 143
           PS  +N+ + +      FF  +H Q Q+L
Sbjct: 33  PSEEYNQ-NSYIPPGGDFFGNHHIQQQQL 60


>EF222289-1|ABN79649.1|   68|Tribolium castaneum adipokinetic
           hormone 2 protein.
          Length = 68

 Score = 19.0 bits (37), Expect = 4.6
 Identities = 10/33 (30%), Positives = 13/33 (39%)
 Frame = +3

Query: 45  GLSSPSSFFNRCHIWFDTPAPFFSRYHTQTQKL 143
           G  +P    NRC    DT    +     + QKL
Sbjct: 28  GKRAPEGESNRCKESVDTIMLIYKIIQNEAQKL 60


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
          transcription factor Maxillopediaprotein.
          Length = 523

 Score = 18.6 bits (36), Expect = 6.1
 Identities = 6/8 (75%), Positives = 7/8 (87%)
 Frame = -3

Query: 70 KNDDGDDK 47
          + DDGDDK
Sbjct: 67 QGDDGDDK 74


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
          ortholog protein.
          Length = 471

 Score = 18.6 bits (36), Expect = 6.1
 Identities = 6/8 (75%), Positives = 7/8 (87%)
 Frame = -3

Query: 70 KNDDGDDK 47
          + DDGDDK
Sbjct: 15 QGDDGDDK 22


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 18.6 bits (36), Expect = 6.1
 Identities = 6/8 (75%), Positives = 7/8 (87%)
 Frame = -3

Query: 70  KNDDGDDK 47
           + DDGDDK
Sbjct: 198 QGDDGDDK 205


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.314    0.135    0.396 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 34,863
Number of Sequences: 336
Number of extensions: 610
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 39
effective length of database: 109,481
effective search space used:  2189620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 34 (18.3 bits)