Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc2a21
         (180 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC12B10.15c |||ribonuclease H2 complex subunit|Schizosaccharom...    29   0.11 
SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual    23   4.0  
SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces pomb...    23   5.3  
SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr...    22   9.3  
SPBC1271.06c |mug96||sequence orphan|Schizosaccharomyces pombe|c...    22   9.3  

>SPAC12B10.15c |||ribonuclease H2 complex
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 147

 Score = 28.7 bits (61), Expect = 0.11
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +3

Query: 78  CHIWFDTPAPFFSRYHTQTQ 137
           CHI +D PAP F  +H + Q
Sbjct: 26  CHISYDGPAPVFEYFHDKIQ 45


>SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1339

 Score = 23.4 bits (48), Expect = 4.0
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -3

Query: 109 NGAGVSNHMWHRLKND 62
           N A V  H+W R +ND
Sbjct: 655 NSATVEKHIWERKEND 670


>SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 478

 Score = 23.0 bits (47), Expect = 5.3
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +3

Query: 45  GLSSPSSFFNRCHIWFDTPAPFFS 116
           G  +PSS    C ++ DTPA   S
Sbjct: 399 GYGTPSSAATLCPLYRDTPAAIVS 422


>SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 553

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = -3

Query: 94  SNHMWHRLKNDDGDDKP 44
           S H   RLKN+D   KP
Sbjct: 276 SKHRIARLKNEDNTQKP 292


>SPBC1271.06c |mug96||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 146

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +3

Query: 60  SSFFNRCHIWFDTPAPFFSRYHTQTQKLGLQ 152
           SS+F++    F TP  FF +    T K  LQ
Sbjct: 5   SSYFSKQMNRFSTPFVFFFKKLNNTLKKSLQ 35


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.314    0.135    0.396 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 578,337
Number of Sequences: 5004
Number of extensions: 8142
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 2,362,478
effective HSP length: 40
effective length of database: 2,162,318
effective search space used: 41084042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)