Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc2a21
         (180 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0281 + 2186500-2187435,2187518-2187616,2187707-2187772,218...    27   1.6  
01_06_0903 + 32862551-32864752,32865341-32865535,32866219-328665...    27   2.1  
08_01_0083 - 604175-605776                                             27   2.8  
08_01_0082 - 588269-588434,590800-591653                               27   2.8  
07_03_0106 - 13460882-13462086,13463452-13463629                       26   4.9  
09_06_0364 + 22554082-22554225,22554306-22554520,22554671-225547...    25   6.5  
10_08_1056 - 22591847-22591936,22592968-22593052,22593135-22593430     25   8.6  

>05_01_0281 +
           2186500-2187435,2187518-2187616,2187707-2187772,
           2187850-2188266
          Length = 505

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = -3

Query: 115 LKNGAGVSNHMWHRLKNDDGDDKPCL 38
           L  G G +NH  H   +DD DD P L
Sbjct: 56  LMRGGGAANHHHHDDDDDDDDDVPWL 81


>01_06_0903 +
           32862551-32864752,32865341-32865535,32866219-32866523,
           32866664-32866849,32867137-32867314,32867548-32867574
          Length = 1030

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 15/29 (51%), Positives = 17/29 (58%)
 Frame = +3

Query: 48  LSSPSSFFNRCHIWFDTPAPFFSRYHTQT 134
           LSSPS   +R    FDT  PF  R HTQ+
Sbjct: 626 LSSPSPRHSRAS--FDTAMPFTPRRHTQS 652


>08_01_0083 - 604175-605776
          Length = 533

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +3

Query: 96  TPAPFFSRYHTQTQKLGLQTPPG*TSHI 179
           TPAP F R+  +T  + +  P G   HI
Sbjct: 218 TPAPVFRRWFVETSPVPIPMPVGKLQHI 245


>08_01_0082 - 588269-588434,590800-591653
          Length = 339

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +3

Query: 96  TPAPFFSRYHTQTQKLGLQTPPG*TSHI 179
           TPAP F R+  +T  + +  P G   HI
Sbjct: 221 TPAPVFRRWFVETSPVPIPMPVGKLQHI 248


>07_03_0106 - 13460882-13462086,13463452-13463629
          Length = 460

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = -3

Query: 178 MCEVYPGGVCNPSFCVCV*YRLKNGAGVSNHMWHRLKNDDGDDKPCL 38
           +C+ +   +C+P F     YR  +G+     + HRL+  DGD  P L
Sbjct: 96  VCKAWLRAICDPVFLRR--YRAFHGSPPLLGLLHRLRVIDGDPAPRL 140


>09_06_0364 +
           22554082-22554225,22554306-22554520,22554671-22554752,
           22554976-22555371,22555553-22556293,22556420-22556551,
           22556981-22557367
          Length = 698

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = +2

Query: 95  HAGAVLQPVSHADAEAR 145
           HAG  L PV+ ADA+AR
Sbjct: 184 HAGECLDPVAVADAKAR 200


>10_08_1056 - 22591847-22591936,22592968-22593052,22593135-22593430
          Length = 156

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 12/23 (52%), Positives = 14/23 (60%), Gaps = 2/23 (8%)
 Frame = +3

Query: 99  PAPFFSRYHTQTQKLGL--QTPP 161
           P PF SR+H  T  LGL   +PP
Sbjct: 39  PLPFSSRHHLLTPPLGLHPSSPP 61


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.314    0.135    0.396 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,005,161
Number of Sequences: 37544
Number of extensions: 64632
Number of successful extensions: 87
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 14,793,348
effective HSP length: 39
effective length of database: 13,329,132
effective search space used: 266582640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)