Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc2a21
         (180 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24828| Best HMM Match : Peptidase_A17 (HMM E-Value=1.7e-23)         27   3.2  
SB_50147| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   7.5  
SB_7282| Best HMM Match : No HMM Matches (HMM E-Value=.)               25   9.9  

>SB_24828| Best HMM Match : Peptidase_A17 (HMM E-Value=1.7e-23)
          Length = 1531

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -3

Query: 118 RLKNGAGVSNHMWHRLKNDDGDD 50
           +LK+GA  ++H WH  +   GDD
Sbjct: 377 KLKDGAKTTDHNWHVHEKPVGDD 399


>SB_50147| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 739

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -3

Query: 88  HMWHRLKNDDGDDKPCL 38
           ++WH LK DD + +P L
Sbjct: 404 NIWHHLKGDDKEKRPIL 420


>SB_7282| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1702

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -2

Query: 116 AEERRRRVKPYVAPVEE 66
           AEE   R+ PY++PV+E
Sbjct: 54  AEESSHRLGPYISPVDE 70


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.314    0.135    0.396 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,556,776
Number of Sequences: 59808
Number of extensions: 73623
Number of successful extensions: 89
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 16,821,457
effective HSP length: 38
effective length of database: 14,548,753
effective search space used: 305523813
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)