Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc2a18
         (736 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0709 - 35670153-35670350,35671206-35671259,35672444-356725...    93   3e-19
05_01_0594 - 5337804-5337976,5338282-5338436,5338591-5338745,533...    78   8e-15
12_02_0811 - 23370455-23370472,23372279-23372538,23372645-233727...    29   5.1  
06_03_0501 + 21476715-21476785,21477045-21477786,21478097-214782...    29   5.1  
05_03_0089 - 8327044-8327142,8327238-8327306,8327413-8327504,832...    28   6.7  

>03_06_0709 -
           35670153-35670350,35671206-35671259,35672444-35672527,
           35672688-35672902,35673959-35674058,35674178-35674276
          Length = 249

 Score = 92.7 bits (220), Expect = 3e-19
 Identities = 52/172 (30%), Positives = 88/172 (51%), Gaps = 11/172 (6%)
 Frame = +1

Query: 247 DWYNGVPFFTRYWMTFTIVLSLFGKFGLVSPYYFILDFYYFFNQFQIWRPLTALFYYPIN 426
           +WY  +P  TR ++T  +V ++     ++SPY+  L+       ++IWR +T   Y+   
Sbjct: 7   EWYRQMPIITRSYLTAAVVTTVGCTLEIISPYHLYLNPKLVVQHYEIWRLVTNFLYF--- 63

Query: 427 PGTGFHFLINCYFLYNYSQRFETGMFAGKPADYFYMLLFNWVC---CVIIGLLV------ 579
                 FL + +FL  Y +  E   F G+ AD+FYMLLF        V+IG ++      
Sbjct: 64  RKMDLDFLFHMFFLARYCKLLEENSFRGRTADFFYMLLFGATVLTGIVLIGGMIPYISET 123

Query: 580 --KLPVLMDPMVLSVLYVWCQLNKDVIVSFWFGTRFKAMYLPWVLLAFNLVI 729
             ++  L + +   ++YVW + N  + +SF     F A YLPWVLL F++++
Sbjct: 124 FARILFLSNSLTFMMVYVWSKHNPFIHMSFLGLFTFTAAYLPWVLLGFSILV 175


>05_01_0594 -
           5337804-5337976,5338282-5338436,5338591-5338745,
           5338864-5338992,5339096-5339189,5339293-5339366,
           5339716-5339851,5341546-5341562
          Length = 310

 Score = 77.8 bits (183), Expect = 8e-15
 Identities = 41/167 (24%), Positives = 84/167 (50%), Gaps = 2/167 (1%)
 Frame = +1

Query: 232 MSEFRDWYNGVPFFTRYWMTFTIVLSLFGKFGLVSPYYFILDFYYFFNQFQIWRPLTALF 411
           MS   ++YN +P  ++ + T     ++  +  +++P +  L + + F +FQIWR  T+ F
Sbjct: 1   MSSPAEYYNSLPPISKAYGTLCFFATVLCQLQILNPPFLALYYPFVFKKFQIWRLFTSFF 60

Query: 412 YYPINPGTGFHFLINCYFLYNYSQRFETGMFAGKPADYFYMLLFNWVCCVIIGLLVKLPV 591
           +         +F I    +  Y  + E G F  + AD+ +M++F  +  + +  +  L +
Sbjct: 61  FL---GKFSINFGIRLLMIARYGVQLEKGAFEKRTADFLWMMIFGAISLLALSAIPFLDI 117

Query: 592 --LMDPMVLSVLYVWCQLNKDVIVSFWFGTRFKAMYLPWVLLAFNLV 726
             L  PMV  +LYVW +   +  +S +   + ++ YLPW +L  +++
Sbjct: 118 YFLGVPMVSMLLYVWSREYPNSQISMYGLVQLRSFYLPWAMLGLDVI 164


>12_02_0811 -
           23370455-23370472,23372279-23372538,23372645-23372713,
           23372979-23373105,23373187-23373422,23373509-23373678,
           23373855-23373935,23374013-23374084,23374273-23374344,
           23374450-23374588,23375141-23375643,23376817-23377010,
           23377952-23378488
          Length = 825

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 11/24 (45%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
 Frame = +1

Query: 364 YFFNQFQIWRPLT--ALFYYPINP 429
           + FN++Q WRP +   LF YP +P
Sbjct: 226 FAFNRYQFWRPASYYKLFRYPFDP 249


>06_03_0501 +
           21476715-21476785,21477045-21477786,21478097-21478246,
           21478350-21478589,21479968-21480048,21480144-21480185,
           21480953-21481033,21481271-21481368,21482574-21482667,
           21482733-21482861,21483881-21483931,21484023-21484049,
           21484280-21484387,21484956-21485201
          Length = 719

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 6/52 (11%)
 Frame = -3

Query: 668 NQNDTITSLL------S*HHTYNTESTIGSINTGNLTSNPMITQHTQLNKSM 531
           N+ DTIT+        + HH  NTE TI S+ +GN+  NP   + T   + +
Sbjct: 567 NEYDTITAFQVSFVCGTRHHVMNTEHTIISLGSGNM-GNPQQMEGTNYQECL 617


>05_03_0089 -
           8327044-8327142,8327238-8327306,8327413-8327504,
           8327932-8329042
          Length = 456

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +1

Query: 511 KPADYFYMLLFNWVCCVIIGLLVKL 585
           KPA Y    L NW C +IIG+L+ L
Sbjct: 412 KPAKYSLSWLMNW-CFIIIGMLLML 435


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,941,422
Number of Sequences: 37544
Number of extensions: 364099
Number of successful extensions: 788
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 764
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 785
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1933531792
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)