Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc2a18
(736 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z78418-1|CAB01696.1| 245|Caenorhabditis elegans Hypothetical pr... 206 2e-53
U00036-12|AAK29854.2| 237|Caenorhabditis elegans Hypothetical p... 100 2e-21
AF143152-1|AAD37863.1| 237|Caenorhabditis elegans putative NADH... 100 2e-21
Z81030-14|CAJ43441.1| 75|Caenorhabditis elegans Hypothetical p... 31 1.1
Z83238-7|CAB05797.1| 313|Caenorhabditis elegans Hypothetical pr... 30 2.0
U00049-3|AAC47059.1| 339|Caenorhabditis elegans Serpentine rece... 29 2.6
AF067608-13|AAK95862.1| 1634|Caenorhabditis elegans Hypothetical... 29 4.5
Z49909-3|CAA90107.2| 603|Caenorhabditis elegans Hypothetical pr... 28 6.0
Z82261-7|CAH60757.2| 300|Caenorhabditis elegans Hypothetical pr... 28 7.9
Z68222-7|CAA92504.2| 568|Caenorhabditis elegans Hypothetical pr... 28 7.9
AF038606-8|AAB92022.2| 313|Caenorhabditis elegans Serpentine re... 28 7.9
>Z78418-1|CAB01696.1| 245|Caenorhabditis elegans Hypothetical
protein F25D7.1 protein.
Length = 245
Score = 206 bits (502), Expect = 2e-53
Identities = 84/159 (52%), Positives = 112/159 (70%)
Frame = +1
Query: 259 GVPFFTRYWMTFTIVLSLFGKFGLVSPYYFILDFYYFFNQFQIWRPLTALFYYPINPGTG 438
G+P TRYW + ++ L G+FG ++ + L + N+FQ WRPLTAL YYP+ P TG
Sbjct: 9 GIPIVTRYWFLASTIIPLLGRFGFINVQWMFLQWDLVVNKFQFWRPLTALIYYPVTPQTG 68
Query: 439 FHFLINCYFLYNYSQRFETGMFAGKPADYFYMLLFNWVCCVIIGLLVKLPVLMDPMVLSV 618
FH+L+ CYFLYNYS+ E+ + G+ ADY +ML+FNW C + + + + L++PMV+SV
Sbjct: 69 FHWLMMCYFLYNYSKALESETYRGRSADYLFMLIFNWFFCSGLCMALDIYFLLEPMVISV 128
Query: 619 LYVWCQLNKDVIVSFWFGTRFKAMYLPWVLLAFNLVISG 735
LYVWCQ+NKD IVSFWFG RF A YLPWVL FN V+ G
Sbjct: 129 LYVWCQVNKDTIVSFWFGMRFPARYLPWVLWGFNAVLRG 167
>U00036-12|AAK29854.2| 237|Caenorhabditis elegans Hypothetical
protein R151.6 protein.
Length = 237
Score = 99.5 bits (237), Expect = 2e-21
Identities = 47/156 (30%), Positives = 83/156 (53%)
Frame = +1
Query: 262 VPFFTRYWMTFTIVLSLFGKFGLVSPYYFILDFYYFFNQFQIWRPLTALFYYPINPGTGF 441
+P TR++ ++L+ V+P++ ++ ++Q WR +T+ ++ GF
Sbjct: 11 MPPVTRFYTGACVLLTTAVHLEFVTPFHLYFNWELIIRKYQFWRLITSFCFFG---SFGF 67
Query: 442 HFLINCYFLYNYSQRFETGMFAGKPADYFYMLLFNWVCCVIIGLLVKLPVLMDPMVLSVL 621
FL N F Y Y E G F G+ AD+ YM LF V ++ G+ V++ L + ++
Sbjct: 68 SFLFNMIFTYRYCMMLEEGSFRGRRADFVYMFLFGAVLMILSGIFVQILFLGQAFTIMLV 127
Query: 622 YVWCQLNKDVIVSFWFGTRFKAMYLPWVLLAFNLVI 729
Y+W + N + ++F+ F A YLPWVLL F+L++
Sbjct: 128 YIWSRRNPMIQMNFFGVLTFTAPYLPWVLLLFSLLL 163
>AF143152-1|AAD37863.1| 237|Caenorhabditis elegans putative NADH
oxidoreductase complexI subunit protein.
Length = 237
Score = 99.5 bits (237), Expect = 2e-21
Identities = 47/156 (30%), Positives = 83/156 (53%)
Frame = +1
Query: 262 VPFFTRYWMTFTIVLSLFGKFGLVSPYYFILDFYYFFNQFQIWRPLTALFYYPINPGTGF 441
+P TR++ ++L+ V+P++ ++ ++Q WR +T+ ++ GF
Sbjct: 11 MPPVTRFYTGACVLLTTAVHLEFVTPFHLYFNWELIIRKYQFWRLITSFCFFG---SFGF 67
Query: 442 HFLINCYFLYNYSQRFETGMFAGKPADYFYMLLFNWVCCVIIGLLVKLPVLMDPMVLSVL 621
FL N F Y Y E G F G+ AD+ YM LF V ++ G+ V++ L + ++
Sbjct: 68 SFLFNMIFTYRYCMMLEEGSFRGRRADFVYMFLFGAVLMILSGIFVQILFLGQAFTIMLV 127
Query: 622 YVWCQLNKDVIVSFWFGTRFKAMYLPWVLLAFNLVI 729
Y+W + N + ++F+ F A YLPWVLL F+L++
Sbjct: 128 YIWSRRNPMIQMNFFGVLTFTAPYLPWVLLLFSLLL 163
>Z81030-14|CAJ43441.1| 75|Caenorhabditis elegans Hypothetical
protein C01G10.17 protein.
Length = 75
Score = 30.7 bits (66), Expect = 1.1
Identities = 15/55 (27%), Positives = 24/55 (43%)
Frame = +1
Query: 295 TIVLSLFGKFGLVSPYYFILDFYYFFNQFQIWRPLTALFYYPINPGTGFHFLINC 459
T++ +L F YY +YY N + T +YYP N G+++ C
Sbjct: 5 TLIATLLVLFAATDAYYTY--YYYPNNNYNNNNGYTTYYYYPNNNNNGYYYNNGC 57
>Z83238-7|CAB05797.1| 313|Caenorhabditis elegans Hypothetical
protein T08G3.8 protein.
Length = 313
Score = 29.9 bits (64), Expect = 2.0
Identities = 22/114 (19%), Positives = 48/114 (42%), Gaps = 1/114 (0%)
Frame = +1
Query: 355 DFYYFFNQFQIWRPLTALFYYPINPGTGFHFLINCYFLYNYSQRFETGMFAGKPADYFYM 534
DF+Y FN++ ++ +T ++ P ++ YFLY ++ + T + P +
Sbjct: 6 DFHYEFNRYSLFAIVTGIYSMPT---VYILIKLSYYFLYRKNKCYSTDL---HPVLFRQF 59
Query: 535 LLFNWVCCVIIGLLVKLPVLMDPMVLSVLYVWCQL-NKDVIVSFWFGTRFKAMY 693
++ C + +K + P+ V+ WC + N ++ F + Y
Sbjct: 60 MIMQIAC--FFNVCIKFLIFRIPLT-GVMTEWCAVTNPSGVLDFLIFINYAISY 110
>U00049-3|AAC47059.1| 339|Caenorhabditis elegans Serpentine
receptor, class g (gamma)protein 7 protein.
Length = 339
Score = 29.5 bits (63), Expect = 2.6
Identities = 24/95 (25%), Positives = 44/95 (46%), Gaps = 3/95 (3%)
Frame = +1
Query: 439 FHFLINCYF-LYNYSQRFETGMFAGKPADYFYMLLFNWVCCVIIGLLVKLPVLMDPMVLS 615
+ + + YF +YNY++ F+TG G + +L + + + L L +L
Sbjct: 105 YPIISDIYFPIYNYARVFKTGSQCGMILSRLFCVLIPFGHDEKLRRHIPL-FLTIICILP 163
Query: 616 VLYVWCQLNKDVIVSFWFGTRFKAMY--LPWVLLA 714
+L VW + + V FW+G F + + WV L+
Sbjct: 164 ILVVWNTVISEKEVVFWYGGFFVIYHRRVGWVSLS 198
>AF067608-13|AAK95862.1| 1634|Caenorhabditis elegans Hypothetical
protein B0511.12 protein.
Length = 1634
Score = 28.7 bits (61), Expect = 4.5
Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Frame = +1
Query: 589 VLMDPMVLSVLYVWCQLNK---DVIVSFWFGTRFKAMYLPWVL 708
V+ +P V ++C N D + S + FK+MYLPW++
Sbjct: 946 VIENPRYTDVDSIFCSTNDEDYDTVESGISRSSFKSMYLPWIM 988
>Z49909-3|CAA90107.2| 603|Caenorhabditis elegans Hypothetical
protein C14A4.3 protein.
Length = 603
Score = 28.3 bits (60), Expect = 6.0
Identities = 8/27 (29%), Positives = 18/27 (66%)
Frame = +1
Query: 388 WRPLTALFYYPINPGTGFHFLINCYFL 468
W+P+ +L + ++ TGFH L+ +++
Sbjct: 556 WKPVDSLPFIDVSKSTGFHGLLRAFYV 582
>Z82261-7|CAH60757.2| 300|Caenorhabditis elegans Hypothetical
protein C35D6.10 protein.
Length = 300
Score = 27.9 bits (59), Expect = 7.9
Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 7/72 (9%)
Frame = +1
Query: 457 CYFLYNYSQRFETGMF---AGKPADYFYMLLFNWVCCVIIGLLVKLPVLMDPMVLSV--L 621
CYFL+ SQ F +F K +F+ + +V V GLL K+ VL +V +
Sbjct: 98 CYFLFIISQTFNIVVFLVAVEKWLGHFFPIFGQYVTSVRKGLLNKIWVLYIFLVFKEFGI 157
Query: 622 YV--WCQLNKDV 651
YV C ++KD+
Sbjct: 158 YVGIGCTVDKDM 169
>Z68222-7|CAA92504.2| 568|Caenorhabditis elegans Hypothetical
protein ZK1251.8 protein.
Length = 568
Score = 27.9 bits (59), Expect = 7.9
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = +1
Query: 520 DYFYMLLFNWVCCVIIGLLVKLPVLMDPMVLSVLYV 627
D+F L FN+V IGL +P D ++++++Y+
Sbjct: 342 DFFKALYFNFVTLTTIGLGDFVPKSFDYLLITLIYI 377
>AF038606-8|AAB92022.2| 313|Caenorhabditis elegans Serpentine
receptor, class z protein60 protein.
Length = 313
Score = 27.9 bits (59), Expect = 7.9
Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
Frame = +1
Query: 535 LLFNWVCCVIIGLLVKLPVLMDPMVLSVLYVWCQLNKDVIVSFWFGTR---FKAMYLPWV 705
LL + C++I L+ +P+L+ L+ L + N + FW FK +Y+P
Sbjct: 181 LLVSQTICILISALLYIPILISVRKLANLASALENNPQKYI-FWQTMTVFIFKLLYIP-- 237
Query: 706 LLAFNLVIS 732
+AF L++S
Sbjct: 238 AIAFALLVS 246
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,941,455
Number of Sequences: 27780
Number of extensions: 379574
Number of successful extensions: 1096
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1028
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1092
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1724918872
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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