Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc2a17
         (185 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.       22   0.49 
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    20   2.6  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    19   3.5  
AM292351-1|CAL23163.2|  394|Tribolium castaneum gustatory recept...    19   3.5  
AM292350-1|CAL23162.2|  429|Tribolium castaneum gustatory recept...    19   3.5  
AM292328-1|CAL23140.2|  429|Tribolium castaneum gustatory recept...    19   3.5  
AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger tran...    19   3.5  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    19   4.6  
AM292326-1|CAL23138.2|  522|Tribolium castaneum gustatory recept...    19   6.1  
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    19   6.1  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    18   8.1  
AY873916-1|AAW67572.1|  377|Tribolium castaneum chitinase 6 prot...    18   8.1  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           18   8.1  

>U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.
          Length = 470

 Score = 22.2 bits (45), Expect = 0.49
 Identities = 8/13 (61%), Positives = 12/13 (92%)
 Frame = -2

Query: 85  ISTILLPVRPPVT 47
           +++ LLPVRPP+T
Sbjct: 358 VTSGLLPVRPPLT 370


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10
           protein.
          Length = 2700

 Score = 19.8 bits (39), Expect = 2.6
 Identities = 7/26 (26%), Positives = 15/26 (57%)
 Frame = +3

Query: 36  IISRVTGGRTGNNIVDIIQANNSPTE 113
           ++S +     GN ++ + Q+ N PT+
Sbjct: 530 LLSTINRHLRGNELLPMQQSQNPPTK 555



 Score = 18.6 bits (36), Expect = 6.1
 Identities = 9/32 (28%), Positives = 16/32 (50%)
 Frame = +3

Query: 45   RVTGGRTGNNIVDIIQANNSPTEGDQLGQFVN 140
            RVTG +     V +     + ++GD+  + VN
Sbjct: 1460 RVTGYKAKGIKVSLALGGWNDSQGDKYSRLVN 1491


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 19.4 bits (38), Expect = 3.5
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = +3

Query: 129 QFVNRNRSLIKEFVL 173
           QFV+   ++++EFVL
Sbjct: 196 QFVDSEGNILEEFVL 210


>AM292351-1|CAL23163.2|  394|Tribolium castaneum gustatory receptor
           candidate 30 protein.
          Length = 394

 Score = 19.4 bits (38), Expect = 3.5
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +3

Query: 69  NNIVDIIQANNSPTEG 116
           N +V  ++ NNS +EG
Sbjct: 174 NKLVLALECNNSTSEG 189


>AM292350-1|CAL23162.2|  429|Tribolium castaneum gustatory receptor
           candidate 29 protein.
          Length = 429

 Score = 19.4 bits (38), Expect = 3.5
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +3

Query: 69  NNIVDIIQANNSPTEG 116
           N +V  ++ NNS +EG
Sbjct: 174 NKLVLALECNNSTSEG 189


>AM292328-1|CAL23140.2|  429|Tribolium castaneum gustatory receptor
           candidate 7 protein.
          Length = 429

 Score = 19.4 bits (38), Expect = 3.5
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +3

Query: 69  NNIVDIIQANNSPTEG 116
           N +V  ++ NNS +EG
Sbjct: 174 NKLVLALECNNSTSEG 189


>AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger
           transcription factor protein.
          Length = 228

 Score = 19.4 bits (38), Expect = 3.5
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +3

Query: 57  GRTGNNIVDIIQANNS 104
           GRT NNI  I +  N+
Sbjct: 30  GRTYNNISSISECKNN 45



 Score = 18.2 bits (35), Expect = 8.1
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -2

Query: 127 PS*SPSVGELLAWM 86
           PS SPS G L  W+
Sbjct: 202 PSISPSGGFLPKWL 215


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 19.0 bits (37), Expect = 4.6
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = +3

Query: 102 SPTEGDQLGQFVNRNRSLI 158
           S +E +Q+GQ+V  N  ++
Sbjct: 455 SNSERNQIGQYVTVNGDVV 473


>AM292326-1|CAL23138.2|  522|Tribolium castaneum gustatory receptor
           candidate 5 protein.
          Length = 522

 Score = 18.6 bits (36), Expect = 6.1
 Identities = 10/14 (71%), Positives = 10/14 (71%)
 Frame = -2

Query: 100 LLAWMISTILLPVR 59
           LLA  ISTIL  VR
Sbjct: 74  LLALNISTILTTVR 87


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 18.6 bits (36), Expect = 6.1
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +3

Query: 120 QLGQFVNRNRSLIKEFVLVKKK 185
           ++  F N + S  K F L+K+K
Sbjct: 63  EINAFANVSPSKTKFFNLIKRK 84


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 18.2 bits (35), Expect = 8.1
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +2

Query: 32  RHYIKSDGRSH 64
           RH I S G SH
Sbjct: 353 RHQISSMGHSH 363


>AY873916-1|AAW67572.1|  377|Tribolium castaneum chitinase 6
          protein.
          Length = 377

 Score = 18.2 bits (35), Expect = 8.1
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = -2

Query: 76 ILLPVRPPVTLDIMSAAVGFIMCFF 2
          +L  +    TL   SAA   I+C++
Sbjct: 3  LLTLILSATTLQFTSAASDKIICYY 27


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 18.2 bits (35), Expect = 8.1
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +2

Query: 32  RHYIKSDGRSH 64
           RH I S G SH
Sbjct: 353 RHQISSMGHSH 363


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 38,713
Number of Sequences: 336
Number of extensions: 607
Number of successful extensions: 18
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 122,585
effective HSP length: 41
effective length of database: 108,809
effective search space used:  2176180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 34 (18.5 bits)