Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc2a17
         (185 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7209| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   1.0  
SB_31499| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   7.4  
SB_17184| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   7.4  
SB_55650| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   9.8  

>SB_7209| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 635

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 12/42 (28%), Positives = 26/42 (61%)
 Frame = +3

Query: 30  ADIISRVTGGRTGNNIVDIIQANNSPTEGDQLGQFVNRNRSL 155
           +D ++R   GR+ +N+V+I++      EG++  +   RN+S+
Sbjct: 585 SDSVTREDVGRSNDNLVNIVEDLTGKKEGNENAKGRERNKSV 626


>SB_31499| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 260

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = +2

Query: 29  GRHYIKSDGRSHRQQYRRYH 88
           G HYIK+   S   QYR YH
Sbjct: 193 GYHYIKAITISRLSQYRGYH 212


>SB_17184| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 375

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +2

Query: 5   EAHYETDGGRHYIKSDGRSHRQQYRRYHPSQQLAD*RRS 121
           E  YE    R Y++S  RS+++ Y+R +        +RS
Sbjct: 186 ERSYERSYKRSYVRSYERSYKRSYKRSYKRSYKRSYKRS 224


>SB_55650| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1172

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = -2

Query: 97   LAWMISTILLPVRPPVTLDIMSAAVGF 17
            +A++IST+++   P +   I+S AVGF
Sbjct: 1084 VAFVISTLMIGYFPRIIQPIISKAVGF 1110


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,168,783
Number of Sequences: 59808
Number of extensions: 79331
Number of successful extensions: 227
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 220
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 227
length of database: 16,821,457
effective HSP length: 40
effective length of database: 14,429,137
effective search space used: 303011877
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)