Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc2a16
         (119 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_O65729 Cluster: 60S ribosomal protein L18; n=17; Eukary...    34   0.54 
UniRef50_Q07020 Cluster: 60S ribosomal protein L18; n=124; Eukar...    33   1.7  
UniRef50_A4D0W6 Cluster: Similar to ribosomal protein L18; 60S r...    30   8.8  

>UniRef50_O65729 Cluster: 60S ribosomal protein L18; n=17;
           Eukaryota|Rep: 60S ribosomal protein L18 - Cicer
           arietinum (Chickpea) (Garbanzo)
          Length = 183

 Score = 34.3 bits (75), Expect = 0.54
 Identities = 16/25 (64%), Positives = 19/25 (76%), Gaps = 2/25 (8%)
 Frame = +3

Query: 6   PRSHTKPYVRTKGH--EKARPSRRA 74
           P SHTKPYVR+KG   EKAR  R++
Sbjct: 154 PHSHTKPYVRSKGRKFEKARGRRKS 178


>UniRef50_Q07020 Cluster: 60S ribosomal protein L18; n=124;
           Eukaryota|Rep: 60S ribosomal protein L18 - Homo sapiens
           (Human)
          Length = 188

 Score = 32.7 bits (71), Expect = 1.7
 Identities = 17/26 (65%), Positives = 20/26 (76%), Gaps = 2/26 (7%)
 Frame = +3

Query: 6   PRSHTKPYVRTKGH--EKARPSRRAN 77
           P SHTKPYVR+KG   E+AR  RRA+
Sbjct: 159 PHSHTKPYVRSKGRKFERAR-GRRAS 183


>UniRef50_A4D0W6 Cluster: Similar to ribosomal protein L18; 60S
           ribosomal protein L18; n=2; Homo sapiens|Rep: Similar to
           ribosomal protein L18; 60S ribosomal protein L18 - Homo
           sapiens (Human)
          Length = 224

 Score = 30.3 bits (65), Expect = 8.8
 Identities = 11/15 (73%), Positives = 13/15 (86%)
 Frame = +3

Query: 6   PRSHTKPYVRTKGHE 50
           P SHTKPYVR+KG +
Sbjct: 195 PHSHTKPYVRSKGRK 209


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 108,926,016
Number of Sequences: 1657284
Number of extensions: 1053812
Number of successful extensions: 2205
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2205
length of database: 575,637,011
effective HSP length: 20
effective length of database: 542,491,331
effective search space used: 10307335289
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)